GgaINT0134976 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:994538-995573:+
Coord C1 exon
chr21:994538-994666
Coord A exon
chr21:994667-995444
Coord C2 exon
chr21:995445-995573
Length
778 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
GCCTTTTGGTTTCCTTACAGCAT
3' ss Score
10.2
Exon sequences
Seq C1 exon
CGTGCCCGCAGGGCAGGTTTGGTGAGGGCTGCAGCCAGGTGTGCAGCTGCTCCAACAATGCCACGTGTGACCACATCACTGGCCGCTGTCTGTGCACTGCTGGCTGGATGGGACCCACATGCCAGCAAG
Seq A exon
GTAATGTGCCCCGTGGCTGCCCAGCCTAGCTGTGGATGATAGAAATGCCATTGCTCAGGATGGGCTGTGCTTTTCAATAGGGGTAGTAGATCCAAAAACCTGAGGCAGATGATAGCAAGGCAAGATTGCAAGCGAGACTATCAGCACTTCCCATTCCTTCCCACAGACAGATGCCAAGAGGCTGCCCTCTCCTAGTGCAGCAGTTGTTGTCCTGGCTCGCAGCTCTGTAGCAGCACAGAGGGAGGGCTTGGCTGCTTATTGCAATGCCTCTGGGCACAGCTCAGTGCAATCGAGCACGAGAGCATTATTCACGTGCTTAAGTGGCTTTTTGTGCTGATGCTCGCCCAGCGCTTTGTGGGCTATGTGCCACCACCAGCACTGAGACATCTCTGAGAGGTCAGGCAGTCTGGTGGGCTGTATAAATTCAGTCTCCCTCTTAGCAGTGGTGGGACGCCCACGGTGGAGGCTCAGAAGGCACCGAATGTTTTTCCATCCCTCATGTGTGCTCTACATGCGGCTATTTGTTCCAACAGTGTCCAATCTGCTTTAATTACAGCCACCACCCCCAGCCACAGGCTTCCTCCTGCACTCCATTACTCAGCTTGGCACTGGGCTGGGGGGAAACAGGGTGCTTTTAGGGTTTGGTTTCGGGTCTAGGGAATTTAGGATCCTCATTCCATGCCCTCCCATCCCTGGGCATGCCACCGGAGGCTCAGCTTTTCCTTTGGCACATGCCTGGAGTGGATTTCTGATTGATTGCCTTTTGGTTTCCTTACAG
Seq C2 exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
NA
C2:
PF079748=EGF_2=WD(100=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCAGGTTTGGTGAG
R:
CTCACAGGCCAGCCCAGTC
Band lengths:
247-1025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]