BtaINT0091702 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50797318-50797966:+
Coord C1 exon
chr16:50797318-50797446
Coord A exon
chr16:50797447-50797837
Coord C2 exon
chr16:50797838-50797966
Length
391 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GCTTCTCTCTCTGTCCTCAGCCT
3' ss Score
9.84
Exon sequences
Seq C1 exon
CCTGCCCAGCCCACATGTTCGGCCACAACTGCAGCCAGGCCTGCTCCTGCTTTAATGGGGCCTCCTGTGACCCTGTCCACGGGCAGTGCCGCTGTGGCCCTGGCTGGACGGGGCCCACCTGCCTGCAGG
Seq A exon
GTAAGCCCTGATCGGGAGTCTGGAGCCAGCTGTCATACTTGTCCCTCCCTGGGCCATGCAGGGTGACATGGGTGGGACTTGAGGGGGATCTAAACCTCTCTGGGCAGGGAGGGTGGGAGTCTGTCTCCCTGCTATGGGGCACCTGGGGAGGGATGGAGGCCTTAGGACTCCTAAGGGACCACACCCTTCAGCGCTGAGCCCCCAGAGACTGGCCGGCAGGCCCGGGGAGCCCTGGGCAGCTCGTCCTAGAGGCGGCCCCAGTTCCCGCCCCTAAAGTTTGGTGTCGGGCTTTGGGATGAGCCTGCAGGTCCAGTGGGCTGGCCTTACCGGGGTTCAGGCCTCTGGCCTGGCTGGCGGGGAAACCACAGGTTGCTTCTCTCTCTGTCCTCAG
Seq C2 exon
CCTGCCCAGAGGGCCTCTATGGTGAGGACTGTCAGCACTCCTGCCTGTGCCAGAATGGGGGCAGCTGTGACCCTGTCTCAGGACACTGCACCTGCCCAGAGGGCTGGGCCGGCCTGGCCTGTGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCAGCCCACATGTTC
R:
CCTTCTCACAGGCCAGGC
Band lengths:
257-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development