MmuINT0101989 @ mm9
Intron Retention
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60915411-60917031:+
Coord C1 exon
chr14:60915411-60915611
Coord A exon
chr14:60915612-60916899
Coord C2 exon
chr14:60916900-60917031
Length
1288 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGTGTGCTTATTCCCTAAGGTT
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTGTGGCCATTTGGATGGAGACCCGAGGGAGGTCTCACCAGTGTTCACTCAGTTCTTGGAGTGTGTCTGGCACCTGACTCAGCAGTTCCCACAAGCCTTCGAGTTCAACGAAGCGTTTCTTCTTCAGATCCATGAGCACATTCATTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGGAGAGAGAGGAACTCAG
Seq A exon
GTGAGTGGATGGTGAAATGTGCCTGTCCCCCTGCACCACCGTACATCATGGCTGTACAATGAAGTGCCCTGACCGTTTCAGATAGAGTTGAATTTTACTTTAGACTTTCTTGTTTGTATTTTTGAAGCTAAAGTACCCTACTAATAACTGCCACCTTTCTGCTTTGAAATATATTTTGAAGTATAATAATATCCAGAAAAGTACATGGAGGATTACACACACACACACACACACACACACACACACACACACACACAGCCAGTACCCAGAGCAAGAACCCCATGCTGTTTGTTCCCTTAAAGTTTTGGTGCTCTTTTTCAGTTTAATGTATATTTTTAGAAGAGAGAAATCATTACATAATTTCTTAGAAAGTGTTGGTTACCAGTTTTATAGGGGTGGAAGGCATAAATCAGTGGGTTTGTCTTATGGTAGGTAAGGTGGCAGTTGTAGCTCTCCTCCTTGCGGGGCAGACAAGCCTGCTGGCATTGTTCCATGGTGTCCCTGATGGGGTCTCATGCAGGCACTAAGTACCACACTTGCCCCTCACCTGTTCTTTATACCAGCTTGTAGTTTGGGGTTTGGATTCTGAGTTTAGCTTTCTTATAGTAACAGTGAATCTAGACCTTCCAAGTGACATGTAGAGAGGCTAACAATGGTTTCCTATAATTTGGATCAGGTGACTTTTCTTGGAGTACGAATCTATTTTTAGAGAAACTTCTCAATTGGTACCAAACTCAAAAAAATGAGAAGAGGAAAATAAAAATGGAGATTTCTTAGTAGTCTTTCTTAGAACATACCTGTGGGCCATCTTAGGGCGTATGGTACTGCGCATGCCTACAGCATCTGTTAGGCTTACCTGCTGTGGATATGCCTCCTCTGTAGCCATCTGTCCATCAAATGTGCTTGTCTTTAGACAAGCACATGACTGGCATTTCAAAATCTTCCACTGAAATGTGTTTCTGACCTGTGGTAGTTGCCCTCATGGCCCAGCATGGGGTTGTGAGAATAAGGCAGAACAACTGAATCAGTGTTCTGTTGCGAGGCTTCGCAGTCCTGGGATATGAGGAGAATCCCTAAGTGGACAAGAGAGAAACAGTGGTTGACCTGTGTTGTGCTCAAGACACATTTACTACATGGTCACAAATGAGAAAGAACAGCAGGGAAAGCAGAGCTCAGGCAGGAGAGGTGAGTCTCCAGCTGGAAGCCACGGAAAGCAACCACCTGATCTATAGCATTAGCCGGGCGCTGAGGATCTCTAGGTAAGACTTTTGTGTGCTTATTCCCTAAG
Seq C2 exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCTTTTCTTTTGGATGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGACTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-Mtmr6:NM_144843:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
PF060089=Laminin_I=PU(31.1=71.1),PF102434=MIP-T3=PU(3.3=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGATGGAGACCCGAGG
R:
TGAAAGAGGCTGTATTTGGCT
Band lengths:
319-1607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: