DreINT0098729 @ danRer10
Intron Retention
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24907492-24907893:+
Coord C1 exon
chr24:24907492-24907692
Coord A exon
chr24:24907693-24907758
Coord C2 exon
chr24:24907759-24907893
Length
66 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCATTTGAGTATGATTGCAGGTT
3' ss Score
0.95
Exon sequences
Seq C1 exon
GTGTGATCAGCTGGACCCTGATCCTAAAGAAGTATCCCCCATCTTCACACAATTCCTTGAGTGTGTTTGGCAGCTGACGGAACAGTTTCCTCAGGCTTTTGAGTTTAGCGAGTGGTTTCTCATTCAGATCCACGAGCATATCCATTCCTGCCAGTTTGGCAACTTCCTGGGTAACAGCCAGCGGCAGAGGGAAGACCTTCA
Seq A exon
GTGAGTAAACAAACAGTCATGTCCTTCTCATCTCAAAGCCTTTCATTCATTTGAGTATGATTGCAG
Seq C2 exon
GTTGAAGGAGAGGACGTATTCATTGTGGGCTCACCTTCTGAGTGAAAAGCAGAACTACTTGAACCCCGTGTACAGCCCAAGCTTTGCAGAATCACAACCCGTTTTGGAACCATCCACTCAGGCCTACCACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794:ENSDART00000005845:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGGCAACTTCCTGGGT
R:
GAAGTGGTAGGCCTGAGTGGA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]