RnoINT0095395 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40591519-40593118:+
Coord C1 exon
chr15:40591519-40591719
Coord A exon
chr15:40591720-40592986
Coord C2 exon
chr15:40592987-40593118
Length
1267 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATGTTCTTATTCCCCAAGGTT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCACCAGTGTTTACTCAGTTCTTGGAGTGTGTATGGCATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTTCAACGAAGCGTTTCTTCTTCAGATCCATGAGCACATTCACTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGGAAAGAGAGGAACTCAG
Seq A exon
GTGAGTGGGTAATGAAATGAGCCTTTCCTTCTGCATCACCCACACCATCCCACTGTAAACCATGGCTGAAAATGAAATGCCCTGACGGTTTCAGATAGAACGAGTTTTACAAAAATCTGTAGTTTTGAAGCTAAAGTACCCTACTAATATCTGTCACCTTTCTGTTTTGAAATATATTTGGAAGGTAATATTATTATGAGGTCAGCTAACCCCCCCCACACGCATGCATGCACACACATGCATATGCATACACACAACGTATATAGTCAGTACCCAGAGCAGAGCAAGAACCCCATACTGTTCCCTAAAAGTTTTGATGTTCCTTTTCAGTTTGAATACATATATATATATATATTTAGAAGAGAGAATTCTTTACATTATTTATTTCTCAGAAAGTGTTGGTCACTAGCTTTATAGCAGTGGAAGGTATAAATCAGTGGTTTTGCCTTATGGTAAGGTGCCAGTCATAGCTCTCCTCCCTGTGGAGCAGACAAGCCTGCTGGCATTGGCTGTTTCATGGTGTCCCTGATGGGGTCTCATGTAGGCACTAAGTGCCACACTTGACCCCTTGCCTGTTCTTTATACCAGCTTGAAGTTTTGGGTTTGGATTCTGAGTGAGATTTCTTTCAGTAACAGTGAATCTAGATCTTCCTATAATTTGGATTAGGTGGCTTTTCTTGGGGTACAAATCTATCTTTGGAGAAACTTTCAATTGGTACCAAACTCAAAAAGATGAGAAGAGGAAAATAAAAATGGATATTTCTTAGTAGTCTTTCTTAGAACATACCTGTGGGCCATCATGGGGTACATGGTACTGTGCATGCCTACAGCATCTGTTTGACTTAACTGCTGTGGCCTCCTCTGTAGCCATCTGTCCACCAGACGTGTGCCTTTAGACAAGCACATGACTGGCATTTCAAACTCTTCCACTGAAATGTGGTTTTGTCCTGTGGTAATTGCCCTCGTGGCCCAGCATGGGGTTGTGAGAATAAGGCAGAGCAGCTGAATCAGTGTTCTGTTGCAAGGCTTGGCAGTCCTGGGATAAGAGGAGAATCCCTAAGTGGACAAGTGAGAACCAGTGGTCGACCTGGTTGTGCTCAAGACACATTTATTACATGGTCAGAAATGAGAAAGAGAATGCAGTGAAAGCAGAACTCAGACAGGGAGGTGAGTGTCCATCTAGAAGCCACTGAACCAACCACCTGATCTATAGTTAGCAGGGCGCTGAGTATCGCTGGGTAAGACTTTTATGTTCTTATTCCCCAAG
Seq C2 exon
GTTGAAGGAGAAGACTTACTCCCTGTGGCCTTTTCTTTTGGCTGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGATTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(17.3=97.1),PF097894=DUF2353=PU(14.2=25.0)
A:
NA
C2:
PF097894=DUF2353=FE(36.7=100),PF060089=Laminin_I=PU(29.2=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGATGGTGACCCAAAG
R:
TAAAATTGAAAGAGGCTGTATTTGGC
Band lengths:
326-1593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]