DreINT0098768 @ danRer10
Intron Retention
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21528845-21529272:-
Coord C1 exon
chr5:21529072-21529272
Coord A exon
chr5:21528974-21529071
Coord C2 exon
chr5:21528845-21528973
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CATTTTGTGTGTAATTTTAGGTT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTGTGGCCATCTGGACAGCGACCCAAAGGAAGCGTCTCCGGTGTTCACCCAGTTCCTGGAGTGCGTCTGGCAGCTGTCACAACAATTCCCCTGTGTGTTTGAGTTCAACGAACATTACCTGATAGAAATACATGACCAAGTCTACGCCTGCCAGTACGGAAACTTCATCGGCAACTGTCAGAAGGAGAGGCTAGACATGAG
Seq A exon
GTGAGGAACGAATCCACATGCTAAACAAAACAAAATAAAAGACATACATTTTATTTCTACTTTGTAGTTTTGCTTCAACATTTTGTGTGTAATTTTAG
Seq C2 exon
GTTGCATGAAAAAACCTTTTCCCTGTGGCCGCATCTTCTGGAAAACCAGCATCAGTATCGAAACCCTTTGTACCGGCGCTCATTAGAAAGCACAGTTCTCAGACCAAGCACTTTACCACTACACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592:ENSDART00000002938:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTACGCCTGCCAGTAC
R:
TGCTTGGTCTGAGAACTGTGC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]