BtaINT0096130 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34193307-34194025:+
Coord C1 exon
chr12:34193307-34193507
Coord A exon
chr12:34193508-34193893
Coord C2 exon
chr12:34193894-34194025
Length
386 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TGTTTTTCTCATCACATCAGGTT
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCGCCGGTGTTTACTCAGTTCTTGGAGTGTGTGTGGCATTTGACCGAACAGTTTCCACAAGCCTTCGAGTTCAATGAAGCGTTTCTTCTTCAGATCCATGAACATATCCATTCATGCCAGTTTGGAAACTTTATTGGGAATTGTCAGAAGGAAAGAGAAGAACTCAA
Seq A exon
GTAAGACAGTTGATTGAAATGGGCTTTTTTTTTTTCCTATTTAGCTGAAGTCTAACTTGTAGTTGAACTTAAACTGTCTTGACAATATGATATAGAACTGGGTCTTAACATGAATATTTTGCTGTCTGTATTTCTGCAGCTGAGTAAGCTCTGAGCACCCCTCATGTTCTCGGCTAATAGTTAAAAATTTGTTTTGAAGTGTGATGTGTGTGCAGACAAGTATGTATAACCTAAGTGTGAAAAATTCAGAGGTGAATTTGTGAATTTGTTAAACTGTGACAAAAAGAAAAAGGGGAAACTAAGTCTATGTGGGAAATGATTACCTGCTTTACAGGAGAGTATCAGCGTCTCTGGGAAAGGTCTTCATGTTTTTCTCATCACATCAG
Seq C2 exon
GTTGAAGGAGAAGACATACTCCCTGTGGCCGTTTCTTCTGGACGACCAGAAGAAGTACCTCAATCCTCTCTACAGTTCCCAGTCTCAGAAATCGGCAGTTCTGGAGCCAAATACAGTGTCTTTCAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116:ENSBTAT00000004052:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGATGGTGACCCAAAG
R:
TAAAATTGAAAGACACTGTATTTGGC
Band lengths:
326-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development