GgaINT0115699 @ galGal4
Intron Retention
Gene
ENSGALG00000017112 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr1:176358545-176359526:+
Coord C1 exon
chr1:176358545-176358745
Coord A exon
chr1:176358746-176359391
Coord C2 exon
chr1:176359392-176359526
Length
646 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
TGATCTCTTGTTGCCTTAAGGTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTGCTGTCAGTTGGATGGTGATCCAAAAGAGATCTCGCCAGTGTTCACTCAGTTTTTAGAGAGTGTGTGGAATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTATAATGAAGCTTTCCTCCTTCAGATCCATGAACATGTCCACTCGTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAAAAAGAACGAGAAGAACTGAA
Seq A exon
GTAAGCAGAGGCATTGTGTCTGTTTGTTTGTTCTGGCAGACTAAGAACTTCTGTGAATCTTCTCTAAATTGAACTGGCAGGATAGACAGCACTGTGAAGGGTGCTGAAGAACAGCAGTGCTTTTCATGCTTTTGCATGCTGAATGCTTTTTTATATAGCTGTGGGAGATCCCTTGCTCATCTTTTGTAGGGGAAGTCAAGGCAACTTTCTCCCTCCATTGTACTCCTGGGTATTCTTAAGTTGGAAGCATCACCTCATTGCTTCCCCTATTCTGTTTTCAGGCAACTGTAGAATTGTTTACCTTTCTGATAGTAATTACTCTTGGAAGTATTGATACGATGTCTCAATGCTTTCAGTTGGAAAACTTCTGGAAAGTTTTCAACCTCTCATTTCCGTCTTTAAATACTTAAAAAGCATTTATTGCAATGAGGAAAAACTTGCACAGCACAATTTCTTCTATAACTGATTCCTGTCATATGCTAATGTTGAACAAAAATAAGTTCTACTTTTAGATTTTGAATTAAAATACTTTAAATTCTTTCTTTTAACTTCTTTAAAAAATAATCAAAGATGGATTTACTGTATTGAATAGCTTCTGTGTTTTACTTATAGTCAGTGTCTTGATTTGATCTCTTGTTGCCTTAAG
Seq C2 exon
GTTAAAAGAGAAGACATATTCCCTGTGGCCTTTCCTTCTAGATGAACAAAAGAAATACCAGAATCCTCTGTATAATCCAAGTTTTTCTCCGAATCTAACTCTTTTGGAGCCTAATACTGTGTCATTCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112:ENSGALT00000027648:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1),PF097894=DUF2353=PU(12.0=25.0)
A:
NA
C2:
PF097894=DUF2353=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTCAGTTGGATGGTGA
R:
TGAAATTGAATGACACAGTATTAGGC
Band lengths:
335-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]