MmuINT1023576 @ mm10
Intron Retention
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60296574-60298194:+
Coord C1 exon
chr14:60296574-60296774
Coord A exon
chr14:60296775-60298062
Coord C2 exon
chr14:60298063-60298194
Length
1288 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGTGTGCTTATTCCCTAAGGTT
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTGTGGCCATTTGGATGGAGACCCGAGGGAGGTCTCACCAGTGTTCACTCAGTTCTTGGAGTGTGTCTGGCACCTGACTCAGCAGTTCCCACAAGCCTTCGAGTTCAACGAAGCGTTTCTTCTTCAGATCCATGAGCACATTCATTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGGAGAGAGAGGAACTCAG
Seq A exon
GTGAGTGGATGGTGAAATGTGCCTGTCCCCCTGCACCACCGTACATCATGGCTGTACAATGAAGTGCCCTGACCGTTTCAGATAGAGTTGAATTTTACTTTAGACTTTCTTGTTTGTATTTTTGAAGCTAAAGTACCCTACTAATAACTGCCACCTTTCTGCTTTGAAATATATTTTGAAGTATAATAATATCCAGAAAAGTACATGGAGGATTACACACACACACACACACACACACACACACACACACACACACAGCCAGTACCCAGAGCAAGAACCCCATGCTGTTTGTTCCCTTAAAGTTTTGGTGCTCTTTTTCAGTTTAATGTATATTTTTAGAAGAGAGAAATCATTACATAATTTCTTAGAAAGTGTTGGTTACCAGTTTTATAGGGGTGGAAGGCATAAATCAGTGGGTTTGTCTTATGGTAGGTAAGGTGGCAGTTGTAGCTCTCCTCCTTGCGGGGCAGACAAGCCTGCTGGCATTGTTCCATGGTGTCCCTGATGGGGTCTCATGCAGGCACTAAGTACCACACTTGCCCCTCACCTGTTCTTTATACCAGCTTGTAGTTTGGGGTTTGGATTCTGAGTTTAGCTTTCTTATAGTAACAGTGAATCTAGACCTTCCAAGTGACATGTAGAGAGGCTAACAATGGTTTCCTATAATTTGGATCAGGTGACTTTTCTTGGAGTACGAATCTATTTTTAGAGAAACTTCTCAATTGGTACCAAACTCAAAAAAATGAGAAGAGGAAAATAAAAATGGAGATTTCTTAGTAGTCTTTCTTAGAACATACCTGTGGGCCATCTTAGGGCGTATGGTACTGCGCATGCCTACAGCATCTGTTAGGCTTACCTGCTGTGGATATGCCTCCTCTGTAGCCATCTGTCCATCAAATGTGCTTGTCTTTAGACAAGCACATGACTGGCATTTCAAAATCTTCCACTGAAATGTGTTTCTGACCTGTGGTAGTTGCCCTCATGGCCCAGCATGGGGTTGTGAGAATAAGGCAGAACAACTGAATCAGTGTTCTGTTGCGAGGCTTCGCAGTCCTGGGATATGAGGAGAATCCCTAAGTGGACAAGAGAGAAACAGTGGTTGACCTGTGTTGTGCTCAAGACACATTTACTACATGGTCACAAATGAGAAAGAACAGCAGGGAAAGCAGAGCTCAGGCAGGAGAGGTGAGTCTCCAGCTGGAAGCCACGGAAAGCAACCACCTGATCTATAGCATTAGCCGGGCGCTGAGGATCTCTAGGTAAGACTTTTGTGTGCTTATTCCCTAAG
Seq C2 exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCTTTTCTTTTGGATGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGACTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987:ENSMUST00000022563:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGATGGAGACCCGAGG
R:
TGAAAGAGGCTGTATTTGGCT
Band lengths:
319-1607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types