BtaINT0096157 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101285752-101288657:+
Coord C1 exon
chrX:101285752-101285952
Coord A exon
chrX:101285953-101288528
Coord C2 exon
chrX:101288529-101288657
Length
2576 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
TTGTTTTTCTTTTCTTACAGAAT
3' ss Score
11.7
Exon sequences
Seq C1 exon
GTGTGGCCACCTGGATGGGGACTCTAAAGAAGTATCCCCTATTTTCACACAGTTCCTAGACTGTATCTGGCAATTAATGGAACAATTTCCATGTGCCTTTGAATTTAATGAAAATTTCCTGCTGGAAATTCATGACCATGTTTTCTCCTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAGAAGGATCGAGATGATCTGAG
Seq A exon
GTGAATTCAGTTTGTGAGAAAACACTGAATAGGGAGAGGATATCAGTATAAATTTACTAGTCACCCTGAATTTGGGACAGCAGTTCACAAAAGGGGAGGAGATGACAACTATAAAAATAATTTTTGAAGCATAAAACACTTGGTATTTGTATGGGTATTCCTCAAAACCTCAGATTCTTTATCTGTAAAATAGGGTTAATAATATATAATTTTCAGATCTATCATAAGGAACCAATAAAGCAATGGATGTGCAAGGATTTTATAAGGAATGAGTGTATGAGTAGTCATTAGCTACTATCCTTTATCATTTGTGTCTAAGATCACTAAATAGCAGGTCATAGGCCAAGTCTGGCTTAACAGGTATATTCTGTTTCATCTGTAGAGTATTTTTTAAACTGTTAATTAGTAGTCAGCATTTAAATATCATGATATTTCACATAAAAATCCAGTTGTTTTAGGATTTTTTTCCAAAATCAAAAAGCCACTGTGGCAAAATATTCTGCAATATGAGGAACTCTGGCAGTATTGGACCTGCATTTTCTAATGGCAATAATCAGTTGGAGCTGAATAATAGCCTGCTCCATTTGAATGAAGCAAGCTCACTGTTTGCCACAATTCTCACTATTCTCTGTTGTTTATTCTCAGCTCACTTCATATGTTACTTCCCCAGCTCCTATAGGCACTTGAATTGGTACTGGACTTAAACTCTAACATGCTCACAGTGTATAAAATGTAAATAATTTTTGAAGTTGACAATACAGAGTTTCTGGGAATAGCATTCTCCTTGTTTTAGAGTCAGAAGAAAAGAATAGAGAGGGGAAGTGACTATCTCACAATCGACTCTAGTTTCAGAGTTGTTAACTGAGTAGCAGTTAGCTCAAGGGATGGTTCGGGGAGGGAGGTGGAAGAGGGGTTCAGGATTGGGAACACGTGTACACCCGTGGTGGATTCATATTGATGTATGGCAAAACCAATACAATATTGTAAAGTAATTAGCCTCCAATTAAAATAAATAAATTTAAATTAAAAAAATAAAGTTCTCAGGCCCTGCTATGATATATCTTGGATAAGTCAGATGATATCTCTAATTCTGTTTTCTTGTTAACACTGAGAACAGTGGTGAATTTTGCTGCTTCAAAATCTGTAGTTACTTAGTACCTTCTGTGCACATTTCTATTTCATTTTGCAACTAGAACTTTCTTACCCTCTTCCCAAATGCTTATAAACACATTTGTTCTGTCTCTGACCTGCTTTTCTAGCACTAAAATCAGAGATCTTTTCCGTATACTTTTTCTCCACCCTCTTGAAATGAGGCTAATATATCGTCAACCCATTCCTCACACAAATCTGAATCTACATGTAAAAGATTAAAAATTTTAACATATGCTTTAATAGTGGTTATATAAAACAAGCAGACATATCATTCATCCATGAAAGAAAAGACATGGACTCTAGGATCAGAGAGACCTGGGTTAAGATTTTGGCTCTGTCACCTACTAGCTATGTGACTTTTTGCAAATTAATTTTTGTCTCATTTTCTCATTATTATTTTGGGACTAAAATATCTTACAAGGTTTTATTATGAAATTTAATAGGGTATTTTAAGTAGAGTCTGGGACAGTGTTTGACACATAGTAAATAGTTAATAAATACTACTTACGTTACCACTGCAAGATTTTTTTTTCTTTTTTCAACCAACAACAAATGAGAAAGATGCATATACAGTTCCTTTGGCCTCATTGAAATGGTCTGAGGATTCTAAAAGTTACGAGACTATAATTTTTACGTCATATACCCCATATCAGTTCTCTTTGTTGTCCTCCTAGAGCTTTCTTTGACACTGTATGAGCAAATGAACTTCCCATGTGTGGATACACAGCAGCTTTCATTGGGGACAATGAATTCCATGCTTTTTATGTGTTAACTAAGTCGCTCCCCAGGGACTCAGCTAAGGGATAAGAAGAATCAGTCTTGTAATATAAATATCAAAATCAGTGCTGCACACCTAGGATAACTCACAAATATTTGCCAATATAAATTGCTACATTGTCTTTCACTGTCTTGTACCTTCTGAGGGGAGGAGAAGCTGGCTCAAAATAAAATATAGAAAAGCCAGAAATTTACCTCTTGTCTGTTAATTTACCAGATTTTTAAAAGGAATTCTAGATTTTTTAAAATTGGAAAGGTTATTCATGGAATCCAAGATTTGGAAGACACCTTAAAGATCACATTATACAAATGAGAAAATAGGCCCAGAAAGGGCTAGGGACATCCCTAAGATTACGTCACTACTCTGTGGCAGAGACAGAGAGTCTCTGCATATATACTCAACACATGTTTCTCTTCAATGTGGAACACTTTCTAATCTCTTTAAAAATGGATAAGTTGAAGCCCAGATAATTTGTTACTCTATCATTCTTCATTACCATTTATTTTTATTTTCCTTGTATCATATCCTAGCCTTCTGTCTTAGGTTACTTGTTAATAGAATTTAGATGATTGTCAAGTTCAGCAAATCTATTGATGTTACCTGCTTGCTGCTTTTAATTTTTTGGCTTGTTTTTCTTTTCTTACAG
Seq C2 exon
AATATATGAGAAAACCCATTCAGTGTGGCCTTTCTTGGTTCAGAGGAAACCAGACTTCAGGAACCCTCTCTATAAAGGCTTCACTATGTATGGGGTACTAAATCCTAGTACTGTGCCCTACAACATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705:ENSBTAT00000050192:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.1=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]