HsaINT0106318 @ hg38
Intron Retention
Gene
ENSG00000102043 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:64328772-64331757:-
Coord C1 exon
chrX:64331557-64331757
Coord A exon
chrX:64328901-64331556
Coord C2 exon
chrX:64328772-64328900
Length
2656 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TTGTTTTTCTTTTCTAACAGAGT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GTGTGGCCACCTCGATGGGGACTCTAAAGAAGTGTCCCCTATCTTCACCCAGTTCCTAGACTGTATCTGGCAATTAATGGAACAGTTTCCCTGTGCCTTTGAGTTTAATGAAAACTTCCTGCTGGAGATTCATGACCATGTTTTCTCCTGCCAGTTTGGAAACTTCCTTGGTAACTGCCAGAAGGATCGGGAAGATCTAAG
Seq A exon
GTGAATTTACTTTGTGAGAAGACACTGAACAGGGAGAAGGTGGTCAGTGCAAAAAGAATGTACCTACCACCCTGAATTTGGCATAGCAGTCAAGAAAGGGGAGGAGATAACAATAATAAAAAGAACTTTTGAAGCATAAAGCACTCAATGTTTGCACAGAGATCTCTCAGAACCCTAAGATATCTCATCTGTAAAATAGGGATAATAATGCCTACTTTTTAGAGCAGTCATGAGGATCCAGTAAAATAATGGATGTACAAGGCCTTTGCAAATAATTAATTGCTGTGCAGGTATGAGTAGTCATTATCTACAGTCCTTTCTCACTCATATCAGAGATTACAAACTAGCAGCTCATAGGCCGAACCCAACCCAACAGGCGTGGTTTGTTTAATCTGTGGAGTATTTTTTAAAACTCCTAATTCGTTGCCGACATTTTTGTTTATTTCCGTAGGTTTTTGAGGAACAGGTGGTATTTGGTTACATGAATGAGTTCTTTAGTGGTGATTTGTGAGACTTTGGTTCACCCATCTCCTGAGCAGTATACACTGAACCCAATTTGTAGTCTTTTATCCCTCACCCGCTTCCTACCCTTTCCCTCTGAGTTCCCAAAGTCCATTGTGTCATTCTTATGCCTAGTTGCTAACATTTAAATATCAGTAGATTTCACATTAAAATCCAGTTATTTTAGGATGTTTTTTCTAAATATTCTGAAAAATCAGGAGCTCTGGCAATACTAGACTATTTTCTCATGATAATAAACAGCTAGAGCTGAATAGTAGCTGTTCCATTTGGATGAGGCAAACTCACTCTTGTTGACTGCAGTTCTTACCATTCTCTATAGTTTATTCTTAGCCCATTTCTAATGTTATCTGCCTAGTTCTAGTAGGCAGTTGAGTTTGCACCCCTCACTTAAACTAACAGCTTGGCAATATATGAGACATAAGTACTTTTCAAAATTGACAAGGTAGAGCTCCTGTGAACAGTATTTTCATTATGTTAGAGACAGAGAAAAAGAAATAGGATAGTAGCTGTTTCACAACTCACTCCTATTTCACAGCTGTTGGCTGAGTTAGTAGTTAGCCCAACCCTCAGGCCCCTTTATAGCATAGCAAGATGAAGTTACTTCTCTGTGATTTGGTTTTCCTGTCAACATAGAGAACAATAATGAGTCTTTCTGTTTCAACATTTGTACTTACTTGGTAGTTTCTCTCTTGATGCCATGCATGTTTCTCTCTCTCTGTCTTTACAACTAGACCTTTGTCACTTTCTCCCCAAATTCTTTTAAGATATTCATTCTGTCTTTGTTTACCTACGCGTTAAAACACAGAATCTTTTCCATAATCTTTTTCCTTCTCTTAAAATTGGTCAATATATGTGGTATTTTTCACACAAATCTGAATATCCATTTAAAAAACATAACAGTTGAACATTTTAACATATTTTAAAATAGTGATTACTTAAAATAAGCAGAAGTGTCATTCATTCATGAACAGAAAAGGATGGGCTTTAGAATCAGGCAGACTTGGGTTCAAACTTTGGCTCTCTCACCTACTAGCTATGTGACCTTGAGCAAATTAATATTTAGTCTCATTTTCTCATTAGTAATTTTGGGCTAAAATATCTCACAAGGTTTTATTGGGAAAATTTAAGGAGGTATTTTAGGTAAAGAGTCTGGAATAGTGTTTGAACACATAGTAAATACTCAACAAATTAGTTACCTTACCAACGCAATATTTTTTTTTTTCTGTTATAAACCAACAGCAAATGAGAAAGATGGATGTACAAAGCCTTTGGCCTCACTGAAATGCTCTGACAATTGCAAAAGTTACAAGACCACAATTTTAGGTCTTACCACTTATATCACTCTTCAGTTCTCCTTTAGCTTCCTTTGACATGGTGTGTGTGCAAATGACCTTCTCATGGGTGGTTATACAGTAACTCTCTTTGGGAACCAGTGGATCTCATGTATTTTGAGGTGTTAACTAAGGGACTTGCTTACTGGTTAAGCAGCCTCCCCATGGTCTGAACTAAAGTATAAGAATCAATTTTGTAATATAAATGCCATAATCTTTAGTTGCCCACCTGGGATAACTCATGACATTTTCTAGTATAAATTTCCAATTGTCTTTCACTGTCTTAAACCTTCTGAAGGGAGAAGTAGCTGGCTTTAAGTAAAATGAAATATAGAAGAGCCAGAAATTCACCCCATAGAACCTATCACTTAACTTACCAGACTTGTAAAAGCAATTCCAGAATTTTTAAAACCAGAAAAGTCATTAGTTCATAAAATCCTTGATTTGGAAGATAACTTAGAGGTCACATTTAACGGTGAGGAAATAGGCCCAGAAAAAAACTCGGGATTTTCTTAAGATCACACAGCTATTCCACACAGAGACTGGACTTAGAATCTCCTGTTCTCCAATATGGAACTCTTTCTAACCTCTCATTTATTTTAAAGATGGATAAATTGAAGCCCAGATAATTTGTTACTCCATCAACACTTTTTATCCACTTATTTTTCTTCTGTCATATCCTGTCGTCCTTTCTTGAGCTGGGTTACTTATTAGTAAAATTTGCTGCTTATCAGTTCAACAGGACTATTGAGATTACTTGCTTCCTGCTTTTAATTTTTTGGCTTGTTTTTCTTTTCTAACAG
Seq C2 exon
AGTCTATGAGAAAACACATTCTGTGTGGCCTTTCTTGGTTCAGAGGAAACCAGACTTCAGGAACCCTCTCTATAAAGGCTTCACTATGTATGGGGTACTCAATCCTAGTACTGTGCCCTACAACATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102043:ENST00000374852:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development