GgaINT0073697 @ galGal4
Intron Retention
Gene
ENSGALG00000007590 | MTMR8
Description
myotubularin-related protein 8 [Source:RefSeq peptide;Acc:NP_001012717]
Coordinates
chr4:11598799-11599541:+
Coord C1 exon
chr4:11598799-11598999
Coord A exon
chr4:11599000-11599412
Coord C2 exon
chr4:11599413-11599541
Length
413 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
ATCTTATTTCTAATTGGCAGAAT
3' ss Score
5.58
Exon sequences
Seq C1 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTGTCCCCTGTCTTCACTCAGTTCATTGAGTGCGTCTGGCAGCTCATGCAGCAGTTCCCTTGTACGTTTGAGTTTAATGAACATTTCCTTCTGGAAATCCATGATCATGTCTATTCCTGCCAGTTTGGAAACTTCCTTGGGACCTGCCATAAGGAGCGTGAAGATCTGAA
Seq A exon
GTGAGTTGGCATTTTATGAAGCCAGCAGTCTAAAAGTCACTTCAAATGTCAGGAAAAAGGGCACGTTGTGTGCTTGTTTTTATTGTACTGTAAATCTGTAAAGGGTAATGTCTGCACAGATAACTTTTTCAGTATGAGAAAGAATTGTAGATGAATTATCTCTGCCGTGGTCAGGTGTTGTATTCTGGAATACAGTAATAACTTGCAGATACAGCTTTAGGACTGGATATTGTCCATTTAAAATGCTTATATGTGCTCCTCAGTGATGTATTTTGTGTTAAAGACATTGATCAGTTACTGTATAAAAGTAGTTCTTAACTTCCTCAGTCTAATTCTACTCAGAACAGTCAACATTATTACTTTACTTAACTTGATCTAATAACTAAAAAAAAAATCTTATTTCTAATTGGCAG
Seq C2 exon
AATCTTTGAGAAGACCCACTCTCTGTGGCCTTTCCTCTTACAGAAGAAGCAGGAATTGAGAAATCCTTTGTACAGAGGATTTACAGCTTACAAAGAGCTTCAACCCAACACGCTACCTTTTAGTTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590:ENSGALT00000012271:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGATGGTGACCCAAAGGA
R:
ACTAAAAGGTAGCGTGTTGGGT
Band lengths:
318-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]