MmuINT0110617 @ mm10
Intron Retention
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56323888-56327299:-
Coord C1 exon
chr19:56327195-56327299
Coord A exon
chr19:56323996-56327194
Coord C2 exon
chr19:56323888-56323995
Length
3199 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
GTTCTTGTTCTCTCCACCAGAAA
3' ss Score
9.02
Exon sequences
Seq C1 exon
CGCTTGTACAGGTTGGGAGATGCAGCCTCCCTGCATAGATACACCCCAATCCCAGACCACCCGGATTTCACCCGAGCCCGCATGAACGCAATGCATTTGAGTGAC
Seq A exon
GTAAGTAGCCGTAAGCGGGCACAGGTGCTGTGTGTCTGCTTCTGTAACACTTTCAGCCCCCAATTGATTTATTTATTGGCCTTTTTTTTAAGTCTAAGAAGGAGGACATAAAAATGAAAAAAACAAAACAAAACAAACCCTGATCCCAGAGCAGGACAAACCGTTCATGTGACTTCCCATCATTCTCCTCGCCGGGCCTTGGTTTCCTTACCTGTAAACCAGGAAGAAATGGAGCTGATGTAAATGGGAGTCCCTTGTAGCTCTAACACTCTGGTTCTAGGGGAGGCTTCAAAGGCCTTGGTCATGTGCCTGGTAACAGTCAGGGGTACGGTCCCAGGCGCCGACAGGTGTAGACACACCTGCTCTGTTAATTTCTTGGACGCCTCGGACATTCAGAGACATCTGGCCTTTGAGATGGAATGATACCATCTTACTCTGCAGTTTGAAAAGATGTTCCCGATGTAGCCGGCTCCTTTGTGCATGGATCCGTGCCTGCCAACACTCCAGCTTCCCTTGGATATCTGCCCTTTGCATGCATTCACCAACACGCTGTTTCCTAAACTCAGGCTTGTTGTTGGCAGGGGTTGGAGGCCCCTGGTTGTAAGAGAATAGGCAGCCGCTCAGCCAGCGATGCTGTGATCCTCAGATGACAGGTAAAGAAACAGGGCAATCAAAAGACACCATCAGGTCGGAATAACACAGGCTGAGTGTGTCGGCCTGGGGCAGCGAGCGGCCTCCCGGCGTCCACACATTCTTCCTTGCCTGGCCTGGCCATTGTGTCCTGGGGCTGCGTGTGGATGACAGCTGCTGCTGTTCACCCCAGAGGTGGCTGCCTTGCAGGGGTTGGAGAGAGGCGCCTTCTAGTTAGCGTGTGTGTGAGTTTGTTGCAGTTGTAAAGCCCTGTGGGATCCCCGCACGGTGAATGCTCTCGTGCTTTGTAAATATGAGTTATTACAACCATTTGATGCTTTTGAGGAAACGAGCGAGGGATAATTTTAGAAAGCAGCTCTGGTGGGCTGGCCTCCATCTGGGGAAGCTGGACCGCCCCCTCTGCAGAGCTGGTGGAAGGTCCGGCTCATTAATTCCCAAGGATGGGGAGGCCAGATATCTGCTGGAGTAACTCTCCGAGGACCTCAGCCCAAAGACTGGGAGGAAGGTACTAGTCCATGAGGGTCCCAGCTCAAGGAGGACAGCCACCCGGGGATGGCAAGAACAGTCAGTGTGCTTGCTCTCACAAGAGGGAGGGGACAGCCTGCAGAGTCCCGGAGCTGAAATTAGCCACCAGAGCTCATGGGGTGTGGAGAACCTCGTTTGAAAGAGCACTTCTTCAGGGGCGTGTGGAATGCGCACAATTGGATCAAGTGCTCTGTGAGGAGGATGTGGAGGCAGAGTGACCTTCGTGAGCAAAGAAAGCCATTGAGATGTGCAAGGCAGCCGAAATAACTCAAAAAATCAAATGACTCTAATGTGTGAGGACGAGGACAAAACTGTGATCAAGAAGAGGGACGCCCAGGGTTCCGAATCAAAGTGTGCCGCGCCTGCGGAATGTAAAGAAAGTCAGCAGCAAAGCAGAGACCTCAGCAGTACAGAAAACACAGGAGGACGCCGCCATAAGCAAGCAGTGGTGGGGGGGGTGGGGTGGGGGGGATATCTGGAGAAAGAAAACTCACACACCGGGGACAACCCCAGTGCAGGCCACTGTGTCTACAGGTGTCCCCGAGTTACCCAAGGCTGGGGTGCACAGGTCACTGACCCAGCTTGGTGTTGGACTTGAAGTTGGCGGAAAGCTTTGTGTCATTAACTGGCCTAGATCTGGGGTAGAGGCTTGCATTAGGAAAACACTGGGTCCCCTCTCATAGAGTGTTTGGGGTTCTTGTTACCACTTCCCACTCAGACATCTTTGGAAGCAGACTGCTAGAAAGGGATTGTTGGTGGGTTATTGTCTGACTATTCCTTCTCTTGAATATCTTCCGGTCCTCACTGTTAATCTAGATAGTGACCCAGTCCATGGAGGCAGTTGGCTCTGGCTGTGACCGCAGTTAGGTGGTTCCCATTGCAAGGCTTGGTTCTGTGTGTTCTCAGGACTGGTATATTCAGCTCATGTGTTGTTTGTTGGAGTTGGAGGTCAAGGTGGTGTTATCATGGCAGTCGAAGGGAGATGATATCTGCCCTGCTTGGCCCAGGCACTTCCACTCCTTTCTGTGCCAGGCCCAGAATAAAAGTGGGCGGAGCACTTTGCTTTCATCTGCCTGTCTTCCCTTGTTTAACTCCCTAAGTCTTTGCAGAACAGAGAGCTGGTCCTGACTTCCACTTCCAGGGAACAAAGGGAAGGCTCTCAAGGGGCCCTTGACCTATGTCAGCTCTCAGAATGAGTGAGCAACCATCACAGTCTGGGGCTGGCACTTTGTCACCTGCGGGTGCTGTGACTGTCCTGCTGTCCCGTTTCTCCAAAGCTGAATAGGGGAGAGCATCCATTGGGGCTCTCCTGAAAACTCCTTTCATGGAGGAATTGCCTTATCTTGGAAAGAAATGGTTAGCTACAGGAGGGCAAGAAGAGTTTGGCACCTCCATAGGGGGTGTGGCTGTGTATCAGGCCTAAGAGGATGTGATTACAGACCCTACGGGGGTGTGGGTCAACTTGAAAAGGGGGAAAAGAGGAAAGAAGAAGCTAGGAACTGTGTGGGTCGGTCAGGTACCCTGTCCGGTTCTTGACAATCCATTTAATTCAGATGAAAGCTAAGGCCTCCCTGCATGAGTCTGGAGTGCGGGAGAGATATACTGTGCTTCCTAGTGGTGGGGTGAGGTATCACAGCCAGGCTGAATCCCCAATCTCAGGGACCCAGAGAGGAGCACTTCCAGTGCGTGGGAGCACCTTGGTTCTGGAGATCCAGGTTCTGGGGTCAGGAACCTGAAAGGGTGAGACAGAGCGGGGATCCAGACACAGAACAGATGGTGCAAGGCTCTGGAGACTAGCAGGGTGTGGCAAGCGAGCTAGACTCACAGACCACAACTCCTAAACAGCAGAAACTCTTTATGACCAGTTCCATCAATCCTAGAGTGGGGAAGTAGTCGTCCAGCCTCAAAAGGGCCAGCGGTCCCAGATATCCCTGGGGCCTGATTCCTGCTGAGACCAGCTGAGACCAAATAGCCTGCAGGTAACGGTTGTTTCTCACCCAAGTGTTCTTGTTCTCTCCACCAG
Seq C2 exon
AAAGTCTACAGGAATGCCTGGGAGCAGAGCCGGGCTGGTGGCTATGACTTCAGGCTGGATGCTATCCCATTCCAGACTGCACGGGTGTCCAGGGATATCGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134:ENSMUST00000073536:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types