RnoINT0103061 @ rn6
Intron Retention
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277107599-277110861:-
Coord C1 exon
chr1:277110757-277110861
Coord A exon
chr1:277107707-277110756
Coord C2 exon
chr1:277107599-277107706
Length
3050 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
TGCCTTGTTCTCTCCACCAGAAA
3' ss Score
9.94
Exon sequences
Seq C1 exon
CGCCTGTACAGGTTGGGAGATGCAGACTCTCTACATAGGTACACCCCAATCGCAGACCATCCCGATTTCACCCGAGCCCGCTTGAACGCAATGCATCTGAGTGAC
Seq A exon
GTAAGTAGCAGTAAGCCGGCGTGTGGGCTACATACGTAACACTTCCAGCCCCCAAGAGATTTATTGACTTTTTTTTTTAAAGTCTAGGAAGGAGGACATAAACATGAAAAATCCCTGTACCCAGAGCACAGCAAACTTCCTGTAACTTCCTATCATTTTCCTGACTGGGCCTCAGTTTCCTTATCTGTAAACCGGGAATCGATAAAGTGGAGCTAAACCAGAGTCTCTTGTAGTTCTACCATTGTGACTCTAGGCTGGGCTTCGAGGGCCTCGTCATGTACCTGGAAATGGTCAGGGGTACAGTCCCAGGTGCAGGTATAGACACACTGCTCTCTTAATTTCTTGGACACCTTAGCCATTCAGAGACGTCTGGCGGTGGAGGTGGAAAGACGCCATCTTACTCTGCAGTTTGAAAAGATGTTCCCGATGTAGCGGCCTCCTTTGTGCATGGAACCGTGCCTGCCAACACTCCAGCTTCCCTTGGACGTCTGCCCTTTGCGTGCATAACCAACACGCTGTTTCCTAAACTCGGGCTTGTTGTTGGCAGGGGTTGGAGGCCCCCGGTTGTAATAGAATAGGTAGCCACTCAGCCAGCAATGCTGTGATCCCCAGATGACAGGTAAAGAAACGGTGCAATCAAAAGACACCGTCAGGTCGGAATAACACAGGCTGAGTGTGTCGGCCTGGGGCAGCGAGCGGCCTCCTAGCGTCCAGCCATTCTTCCTTGCCTGGCCTGGCCATTGTGTCCTGGGGCTGCGTGTGGATCGACAGCTGCTGCTGTTCACCCCAGAGGTGGCTGCCTTGCAGGGGTTGGAGAGAGGCGCCTTCTAGTTAGCGTGTGTATTAGTTTGTTGCGGTTGTAAAGCCCTGTGGGATCCCGCACGGTGAATGCTCTCGTGCTTTGTAAATATGAGTTATTACAACCATTTGATGCTTTTGAGGAACGAGCGAGGGATAATTTTAGAAAGCGGCTCTTGTGGGCCGGCCTCCATCTGGGGAAGTTGGACTGCCCCCTCTACAGAGCTGGCCCTCATTAATTCCCAAGGATGGGGAGGCCAGGGTTCCACTGGAGTAACTCTCTGAGGACCTCAGCCCAGAGACTGGGAGGACAGTACTAGTTCATGAGGGTCCCAGCTTAAGGAGGGCAGCCACCTGGGGCTGGCAAAAGCAGTGTGCTTGCTCTCACAACTTGGGGTGTGTGTGTGTGGGAGCTTGCAGAGTCCTGGAGCTGAAATTAGCCATCAGGGCTCATGGGGTGTGGAGAACTCGTGAACCTCGTTTGAAAGAGCACTTCTTCAGGGGCGTGTGGGATGTGCACAATTGGATCAAGTGCTCTGTGAGGAGGATGCAGAGGCAAAGTGACCTTCCTGAGCAAAGAAAAGCCATTGAGATGTGCAAGGCAGCAGAAATAACTCAAAATCAAATGACTCTAATGTGTGAGGACGAGGACAAAACTGTGATCAAGAAGAGGGACACCCAGGGTTCCGAATCAAAGCGCGCGGCGCCTGCCGGCCCGCAGAATGTAAAGAAATGTCGGCAGCAAAGCAGAGACCCCAGCAGCACAGAAAACACAGGGGGACGCCGCCATGAGCAGGCAGTGTGTGGGGTGGGGGTTGGGGGTGCACCTGGAGAAAGAGGGCTCGCACACTGGGGACAACCCCAGTTCGGGCCACTGTGTCTATAGGAGTCCCCGAGTTACCAGATATCCCAAGTTACCTGAGACTGGGGTGCATAGGCCACGGACACAGCTTGGTGTTGAACTTGAAGTTGGTGGAAAGTATGGCAAGGAAAGCACCGGGTGTCCCCTCACAGAGTGTTTGGGGTTCTTGTCTCCACTTCCCTCTCAGACATCTTTGGAAGCCATTGGAACAGGAAGAGGACTGTTGATAGTTGGTGGGTTATTGTCTGACCCTCTTGAGTATCCGGCCCTCACTGTTAAGCTAGACAGTGACTAAGTCTGTGGAAGCAGTTGGCTCTGGCTGTGACCCCAGTGAGGTGATTCCCACGGCAAGACTTGGTTCTGTGTTTCTTGGGACTGGTATGTTCGGCTCGTGTGTGGTTTGTTGGAGCTGGAGGTCAAGATGGTGTGGTCGTGGCCATCGCAGGTAGATGATGAGATCTGCCCTGCTTGGCCCGGGCACTTCTGCTCCTCTTCCAGTGCTAGGCCCGCAGTAAAAGTGGGCGGAGCACTTTGCTTTCCATCTGCCTGTCTTCCCTTGTTTAACTCCCCAAGTCTTTGCAGAACAGAGAGCAGGTCCTGACTTCCACTTCTAGGCAACAAAGGGAAGGCTCTCAAGGGGCCCTTGACCTGCTGCAGGTCTCAGGATGAGCCGGCAACCATCACAGTCTGGGGCTGGCACTTTGTCATCTGCAGGTGCTTGGCTGTCTCGCTGTCCCGTTTCTCTAAGGCTGAATAGGGGACAGCATCCACTGGGGTCTCCTGAAAACTCCTTTCACGGAGGAATTGCCTTATCTTGGGAAGAAATAGCTACAGAAAGGCAAGAAGCGTTTGGACCTCCCTAGGAGACGCAGCTGTGTATCGGGCCTAAGAGAATGTGATTACAGACCCCACGGGGGTGTGGGTCAACTTGAAAAAGGGGGGAAAGAGGAAGGAATAAGATAGGAACTGTGTGGGTCAGGTACCCTGTCAGGTTCTTGACAATCCGTTTAATTCAGATGAAATTCTGCCCTCCCTGCACAGCTCTGGAGTGCATGAGAGATATACCCTGCCTCCTAGTGGTGGGGTGAGGCATCACAGCTAGACTGAACCTCCAACCTCAGGGAGCCAGAGCCAACTGGTGGGTGAGAGGACCCAGAGAAGAGCATTTTCAGCGAGCTAGACCCCCAGACCACGACTCCTGAAGAGCAGAAACCCTTTATGGTCAGTCCCACCAATCCTAGAGTCAGGAAGTCCCCCTATCTCAGAAGGGCCGGTGGACTCAGATATCCCTGGGGCCTGATTCCTGCTGAGACCAGCTGAGACCAGCTGAGACCAAATGGCATACAGGCAGTGGTTGGTCCTCATTTAGGTGCCTTGTTCTCTCCACCAG
Seq C2 exon
AAAGTCTACAGAAATTCCTGGGAGAAGAACCGGGCTGGCGGCTATGACTTCAGGCTGGATGCTATCCCGTTCCAGACTGCACGGGCATCCAGGGATATTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(21.7=14.3),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]