MmuINT0113661 @ mm9
Intron Retention
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50278669-50286344:-
Coord C1 exon
chr6:50286214-50286344
Coord A exon
chr6:50278804-50286213
Coord C2 exon
chr6:50278669-50278803
Length
7410 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
TATTTCTGCCCTGCCACTAGGAA
3' ss Score
8.27
Exon sequences
Seq C1 exon
TTTACTTCGCTTTAAGGTCGGCTTTCAATAGCATATCGGTGGAGAGAGAGAAACTGAAGCAGCTGATGGAGCTGGACACCTCCCCCTCCCCCTCCGCTCAGGTCGTCGGGCTGAAGCACGCTCTGTCATCC
Seq A exon
GTAAGTCGCTTGTCTGTCTCATCCATGTCTGCAAGTGTGCCCAGGCTTGTGAGTTACTAATAATTTCCATTTCCATGGTTGCATTGAAAATTAATGATTTTCATCGTTGAGTTGAATCTTGGGGAGAAAAACCAAACAAATTATCCAGATTATATTCAAGCCTTTCTTCAGACTTTACATATTCAAAATAATCCCAGACCATGGAAGCTAAGATTTTCTTAACTGTTTCTCTTAGTTTGATTTCTTCCAGTTTAACTGATTTTTTTTTCTGTTTCTATAGAACTCGTATGTCTGTGTGGCTGCCTTGCAGACATTCGTTGGCTAATGCTTACAAAGGCTGACATTTAGGAGAGTCAGTAGCTGTGAGGCATCATAACTATAGATGCACTGAATAAATAGCACAGGGCAGTGAGAAATGTCCAGTTTACAGGTCTTCCGTGTCCACTGCGAAGTGCTGATTCTACCTAATGCTCCTCAAATATGTGCATGCTGTGCTCTTTGATTAAATAGCACAAACCGTTTAGCTTGTTCCCCCTCACAGATGCAGGGATGAGTCATATGAATTGGCTTTCAGGTGACCATGCGTCTTCAAACAGGAAAACCACTGCCGGAGCCTCTGATGGGTTCCAGCACACCATTAGCACTCACACTTCTTTTCCTGCTCAGCTTCAGTTTCTTGCCCAGAATGGCTGGGCTGGATGGATACGCTGGGCTGGATGGATACGCTGTGCCCAGGGGCTCCATTGATACACTGTGCCCCGATGCTAACCGAGCAGCTGAAGGTGTCTGGCGCCTTAGCCTTGACGTCTCAGGAAGTCAGAGAACTTTTGAAACAGCATACATATTTGCTCGTTTCTCCTCACTTGTACTTTGGAATTTCTGCCTTGAGAAGAGAAAGCATGAGTGCTCATGTGGAACCTGTCTGAAGTACCACCGACTTGTATTTTGGGTCTGGTGGGAGAAAAGAATTTCAGGTTCATGTGACTAGATGCCACCATAAACACTGAAGGGGGAAAAAAGGTCCATTCATGTTTCCTGTTTGCCATGCTACTGAGAAAAACGATGCTACCTATGGACTGTAAGTTAATTAGTATATGTTGTCACATTACTCATGAACACTTGGCTGGTATTACACAGTACTTAGTGGGGATTCTTTAGGTACTTTCCTTCAGTGGCAATTCCAACTGAGCTATTTTTGGTTAGGCTTTTGAGACAGAGTCTTATAATAGCCCAGACTAGCCTTATGTAGTCATGTGGTCCTGCCTCCACCACCCTCATGTGCTTAGATTATAGTTAGGTGCCAACTATTCGATCTTTGGAGGAAAGATTATAAAGAATATTGACTCACTCCACACATAGAGTCTCCATTTTTTTTCTTATGGTTGGAGGGAAAACGACGTCTTTTGGATCTTGGGAGCAACTGGCTCCACTGGGTTGGTGCTTTTGAGTCTATGCCTTTTTCCTGAGGGTTTATTTCTTCCTGGTACACACATTCTCACAGTTCCAGTCTGAGGGGCTGTTACTGCTTTTAGAAGGGACCTCTGATGGAGGTCCCTAAAGTTCCTTCCTGTCTTCCTCATGTCCCTTCCCCTTCTCACAGAGGTCCAGCCTTGTCTTGCTAATCTGCTTGGCCACACTCATTTGACCATGTTTTGTAGGCCAGACTTACATTTTCTAAGGAATATGCTTGTACATACATTAACAGTTTGGGAATAAGATAAAAATGACTAGATTTCTGCGTTAAGACTTGTTGCTTCAATTTTTTTTTTAGAATAATCACAGAACTATTACAATGAATCTATGGATACTGAATTTTTTTTTCCAAAACAGGGTTTCTCTGTATAGCCCTGGCTGTCTTGGAACCCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAATGCGTGCGCCACCACCGCCCAGCTTGGATACTGAATTTGAGAGACACATACAACACACACAGTTTCTAGACGATGTGTTGCCTCATAGAGGTGCCAGGCATGGTGACCTTGTAATCCCAGTCCTTGGGAAACATAGGCAAGTGTGAAGAGTCCAGCCTGGGCTCCAATGTGAGACCGTATCCCCTATGTTCAACAGTGATGATAAGAAAGGGAATACGTGAAGCCCTTGCAGAGATCCAGGCGGTCAGGAGAGTCTGGCCGCACCTAATGATAGACCTGTAGTCATGAAATGCACAGGAGGGCCAGATGAAGCAAGTGCATATCTTGCTTTTTCTGTGAGCGAGGTCCCAGCCAATAGGCTGAGGTAGGAGGAGGGACCACCCCATGAGGGAATAAATCAGTAGCTTGTCTGGCAGTTTCTTTTATGTTTACAGCTCACACCCACCCTTTGCAAGCATCACGGTCCTTTAGCCTCTACTGTGTCTGAGTAAAGTTTGGCTTGTACATATTTTGAAAAATAAATCGTCTTATTCCCCAAAATGGATAAGTCACCAGCACACTTCGAAGATCCATGGCAGCTGGACTGTTAATTAAATCACACTGGGCCCATGTCCACTGGCATCTTGTCAAGGATGGGAGGAGCTAGGAATCACTAGGTCGGTGGGGGTAGCGTTGGGGAGCTGGCCCATAGATCAGCCTGGCAGGAAATAAAGATACTGACTGTGGGTCACACACCTTAAAAGCTGATGTTTGACTTCTTCTGCCAACTTCACTAACCTCTTTCCACTTCAATTAACATGGAGTAGCCTGGGCTGGACTGTGACCTCCCAGCCTCTCCCTGGAGCGATGGGGAAGCCCAGACACATCCCGAGGATGTCACATCCAGGGGATCTTCGCTCCTTGAGTTGCTTTCCCTAGTCCCCTGCTGAGTTTTCCTGAACCGTCCATTTACTAATACAGCCCTGCTATTTTTTAACATATTCCAGGCCCTAGCACAAAACACAGATCTTAAAGAACGCTTACGCAGAATCCATGCGGAATCTCTGCTCCTCGACCCGCCCGCTGTTCCCAAGCCGGGGGACAACCTGGCAGAGGTGGGTAGGTTTCTCGCCTGCTAACTGTTCTCTGCAACTGCCACCTGTCCTGGGTGCCCTCTGTCCAGCTGCATGGCTTTTGCTTCACCCCCTTGAGTGTCCGCCATGCCTCTGGCCTCCCCTGGCTACAGCTGGGCTCTTGTGTTGCAAAGCCTTGCTGGCAGAATGCTACTTAGCACTCTTCAGCCACCTCCTTCCTTCGTGTCTCCCTCCATACCTCATTTCCCTCTATGGTCGCTATAGTGGGAACTATAGAGTGGCAAACGTTTCTCCTTGTCATTTCTGAAGAAACCTGAGTTTCTGTGATCCAAAGTGCCCACCCAGTTCCTTGCCCGAGTCTTTTTGTGTCCTGTAAAAGCCATGCTAATCTTTACTGTGACTGTCCCTTCTACCTTCTTCTTCTTCCTCTTCCTGCTTTATTTTTTCCTCTTTCAGAACACAGCTGTATACTCCTAGGGGAAAAAAGATACTGCACTACAACTGAAATGGATTAGTGAGTGAACACGCGTTAGAAAGGCCTTTTACGAGATGTGACATAGTTTAGCAGCTTAGTAGGAATTTGCCTCCTGGACCCTAGTTCAATCCATACTTAGATCTCACACACACACACACACACACACACACACACACACCCCTACCTTGATGGGCCTCAGCACGTATCCTGCTGACAGTAGCCTGTTTTAAGCCTGAACTCTTTGACTAGTCTGGTCCTTTCAGGTTTGCACATTAGCAGCTAACACAGGGCCTAGTCTGTGCCACATCTAGCCAGCACTAAGCATCTCTAGCTATACATTGATTTCCAAGCCATTCTTACCTTTTATATACATTATTATCATATGAATTACATCTGCATGTTTTATGATTAAATAGATAACCTGCGCTGCGCATTTGTGAACCATGTCCAGTGGATATCAGTCAGGCTTTTGGTTTTGAGATGAAACCGAAATCCCAGGTCTAGAAAAATGCACATTTGTGGGACTAACCTCAAAAGAAATGACCAGAAAGCTGAAATGTTATGGCCTGTCCAGGAGGAGGATAGCAGGGCCTTGCACTTGTCCCTCCGCAGTGGTCTCAGTTTGGCTGTGTCTCTGTCTCATTTATTTCCTCTTTCCTAGAATTTCTATTTCCAATGCTTTATCCTTTTTTTCCTGCCACTGAGTGACTCAGGCTCTTTCCCAGCAAGGAAAAGCCTTTGTAGCCTTCAGGAAGTAACAACAGAAATAAATAATGGCCACACAGGCTGAAACATACCCTCAATCTTGTGTGTGTGTGTGTGTGTGTGTGTGTACTAACTTTAAATTTTGGTTATTTAAATCATTTCAAATATTTGTTCATTGTGTGAATGGTGTGTACACACGCATGTACCACATGTACATGTGCACACATGTACCACAGGATATGTGTGGGGTAAGAGAGCAGCTTTTGGGAGTCAGCTCTCACTTTCCAGGATGTGGGTTCTGGGGATTGAAGTTAGGCTTGGTGGCAGGTGCCTTTATAGGCTGAGTATCTGACCTGCACTGTGAGTCACTTTGTAGGTGACTCCCAGGAGCCGCAGACTTTTACAGCCAATGACAGACCCCCCAACAATAGGTTTAGCCCACAGGCTTCTGCTTTTCTGGTCTCCCACTGTTCACTTACTTTCTGTTGCCTTCTTTGGCTGCACAGAGGAACTACTGCTGGTGTTGGGCCTAAATGTGACACTCTAATATCACCAGTATAATACACAATCTTATATTATTTTAGATTAGAAATCAAAGGCCGGGGCTCACAGAGACTGAACCACCAACCAAAGAGCAGGGGCTGGACCTAGGCCTCCTACACATTTGAAACAGATATGCAGCTTGGTATTCCTGTGAGTCCCCTAACAATTGAAGGGGGACCTGTCCTGGACTCCTTTGCCTGCCATTGGATCCCCTTCCCCTACCTGAACTGTCTGGTTGGGCCTCAGGGGGAGAGAATGTGCTTAGCCCTGCTGGGATTAGATGTCCCAGGGTGGGGTGGTACTCAAGGGGGGGGGGTCTCCCCTTCTCCTCAGAGAAATAATGGGGGAAGGGATTTGTAAGGGAAGGACTGGGAGGAGAGGAGGGAGGAAGGCTGAGATCAGTATGTAAAGTGAGTGAAAAATAAATTATTAAAAAAATCAAAGACCAAGTGAGAGTAATAACTTCTATATCTAAGTGGTATTTAAGAATGAATGTGATGTAGCACTCAGAAGACAGGGGCAAAAGGATAGTGTGAAGCCAACCCAAGGTCAGGTACTGAGTTTCAGGCTTGTCTAAGATAATAGTAAGACTGTTGCAAACAAATAAATACATCCCATTGACGGCATCTTTAAAACTATAATTAAAAAAAAAAAAACAAACCTAAGAGAAGATAACTTAATTCCTTTATTTATATGTGGGGTTTTTTGCTCTGTTTTTATATTAGGATGGAGCCCTGGGCATTATTGTACACACCCTTAACCTTGTTTCATTCTATGGAGTAAGGGCTGGTAGTTGTAATTTAGAAATAGGGAAAAGCAAAGCCCAGAGCAGTTAAATAACTTCCACCAGAAGCACAGCTTATGAAATCAGGATGTAAATCCAGAGCATGTGTTCTTACCACAGTTTCAGACTTCTGCATAACCAGGAATATGCTGCTGAGCCCGAAGGCCTGGTGCTCGTGGAAGGTCCTTTCCTTAAAGTGAGGTGGAGACCCGGGGACCATCTGCCTCAGACATGGATATGGCTTTATAGTTCTCCTTCGAGAAGAAATAACTAGATGGATAAGAAAGGCATCAAACTTCAATGGGAAAGGCAGACTATTTAACAAATTAGGTCAGCGCAGCTGAAAGCGATTTGAAAAGAAGCTTAAGTTTTATTCTGTTGTGTGCTAAAATTCAAGTTAAATATGAAAGTTGAGACAAAATTTGATTCAAATATTTGTCAAACTGCTAGGATAAGGGTTTCCTAAACTAGAGAGTAATACATTTTCAAAAGTGTCAACTGAATTTGACTTTTTATAGTGAAATATTTATGAAATGAGGCGTGTAAAATAAATGAATGAATGAATGAATGAACAAATGAGTAGATAAAGCCTTCAGTGAGGATGACAGGCTTAGCTAATGCCAAATCAGCGTTACTGTCTTTATTCTGCGAACGAAGACCTTGTAATACCAAGTAACGGAAGCCATCAACAAACAGCAGGAACAGATATCCACACTCACCAGCACACAGCTATGGGGTTTGTTTCTGTGGAATTTTAAAAAAACTTTTCTTTTTCAAGTCAGTCGTGAGGTGTTTAACTACTAGGATATATTCAGGGATGTCATCGGGGCACAGGGTGTGTTGACGAGTTGATCAGAGCATCCTGAACTCATGAGACCTTTGGGTTTGACAGCATCTGCCTGGACTGCCTTTCAGCCTGCTCTGTGGCTCCCTTGCCAGATGCATGACAAGAGTCACCCCAGCCAGCCAGCGAAGTACCTGGGCTGATGAGGGACTCAATTCCAGGAAATTACCTTGTCCTAAGTTAGTCCTCACCAGGGTCTAGCTCCCACGAGTCAGAGTTAAGGTCACCTTCCCCTCCACTTGTGTAGCCCAATGTCTGTTGGTGGTTCTTGTCCGCTGTGTACACGCCCGCAGGCCAGAAGCCTTTTCTGGTCTCCTCGTTCCTCTGTGATTGACGATGTGCAAATATTTGCTTAATTCATTGAATGGGGTTGAAATTTTGCTTGCAAATAGAATAGAAAGCACACTCACTGACTATCCGGATCCTTCCCTGAGCATGAGTCTGGACTCAGTGGGGTGAAGAATGGGGGAATGTGAGAAAAGAGGAGAGTGTTGCTCCGCTAAATTGTTAGTCATACCAGGGCCCGAGGCTTCCTTTTCTTTAAGAGTCATTGTAAGTAAAGAGAGACAAGAAAATTATTCCCACTCCTCCATGAATAAGGGATGGTCTACCACCATAGGCACCTCTGGCCCAAAAGAGAGTTGTTTGTTGACGGCCCCTTGGCAGCAGCCTGTTGGCCTCTGAGTATGCAGTGAGACACCCCGCCTGATGTCAGCCAGCACTGAGCAGTTTAGTGTGGAAAGAAGCCCGCTGAGCCTTAGAGACTAAAAGGGCGTGCCTCAGACTCGGGGCCCTCCTCCTCAGCAGAACACAACTGGTTTGTGCTTGAGACTTGTGGCATGTGCCTGAGCAAAGTGAAGTGAAGTCTCCGTCTGGGAGAGAACTTTGCTTCTCACCTTGTTTCTGTGAGGCTCACTTCTCATTGGAAGCTCCGAGTCTCCTGCTTGCATGGACCTGGGACCCAGTGTTTATGCAGTGAAATCCTTTGTGTGGCTTGTTTCTCTTGAGTCTGTTCTAAATCCGTGCAATTTTATTTCTGCCCTGCCACTAG
Seq C2 exon
GAAAACTCCAGGGATGAGGGCCGAGCCCTGGTGCACCAGCTCTCCAATGAGAGCAGGCTGTCTATCACCGACTCCCTTTCTGAGTTCTTCGATGCCCAGGAAGTTCTGCTGTCTCCTAGCTCTTCAGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822-Osbpl3:NM_001163645:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: