MmuINT0131355 @ mm10
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28545415-28545945:+
Coord C1 exon
chr2:28545415-28545518
Coord A exon
chr2:28545519-28545860
Coord C2 exon
chr2:28545861-28545945
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCGCTCTGTGCCTCCTTCAGGGA
3' ss Score
9.6
Exon sequences
Seq C1 exon
GAGTGCAGAGCGCTCAAGAATTTCTCCTCCCTCTACGCCATCCTCTCTGCTCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACGTGGGAAGAGGTCTCCAG
Seq A exon
GTAGGTCTCCCCATCCCCAACCCTACTGTATCCCAGGCTGGCTCTACCTTTAGTGAGGCCCAACAGCAGAGACCAAGAGAAGGGTAGGCTCACTGGTCGGCACAGCTCAGTGTGCTCACCCTGATTAGAGCCAGGTAAGTATCTCGTGCTTGCACACAGCACAGAACTACCCAGCTGAGAGCAAAACGGTTTTGCCTGCTCTGGTAGGCTTCCATGGAACCATATTTAGGGTTCTTCTCCAGCAGCGCGGAAGCTTTGTTGTAAAGGAAAACGGGTTCCCCACGGTGCTTGCCCCAGTGCACAGCCTTCCCTACAGCCGCCTTCGCTCTGTGCCTCCTTCAG
Seq C2 exon
GGACAGCTTTCGAGTGTTCCAGAAACTGTCGGAGATCTTCTCTGATGAGAACAACTACTCCCTGAGCAGAGAGCTGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821:ENSMUST00000028170:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types