RnoINT0123942 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7122625-7123175:+
Coord C1 exon
chr3:7122625-7122728
Coord A exon
chr3:7122729-7123090
Coord C2 exon
chr3:7123091-7123175
Length
362 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCACTCTGTGCCTCCTCCAGGGG
3' ss Score
10.36
Exon sequences
Seq C1 exon
GAGTGCAGGGTGCTCAAGAATTTCTCCTCCCTCTACGCCATCCTCTCTGCCCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACATGGGAAGAGGTCTCCAG
Seq A exon
GTAGGCCTCCCCGTCCCCAACCCCTACTGTACCCCAAGCTGTCTCTGCCTTCAGTGAGGCCCAGCAGCAAAGATGGAGGGATGGGCCCACTGGTAGGCACAGCTCAGTGTGCACACCCTGATTAGAGCCAGGCAAGTGTCTCGTGCTTGCACACAGCCACAGAGCTGTCCAGCTAAAAGCAAAACACAGTTTTGCATACTCAGGTGGTCTTCAGTGGAACCACGTTTAGGATTCTTCTCCAGCAGCTCAGAATCTTTGCTGTACGGGAAAACGGGCTCCCCACCGTTTTGCCCTGGTACGCACCATGCTTGCCCTGGTGCACGCTCTTCCCAACCATTGCCTTCACTCTGTGCCTCCTCCAG
Seq C2 exon
GGGCAGCTTTCGAGTGTTCCAGAAACTGTCAGAAATCTTCTCTGATGAGAACAACTACTCCTTGAGCAGAGAGCTGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]