HsaINT0137013 @ hg19
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135981319-135982135:-
Coord C1 exon
chr9:135982032-135982135
Coord A exon
chr9:135981404-135982031
Coord C2 exon
chr9:135981319-135981403
Length
628 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTTCTTTGCCCTTCTGACAGGGA
3' ss Score
8.64
Exon sequences
Seq C1 exon
GAGTGCCGGATCCTCAAGAACTTCTCGTCACTGTATGCCATCCTCTCTGCCCTGCAGAGCAACTCCATCCACCGTCTGAAGAAGACGTGGGAAGACGTTTCCAG
Seq A exon
GTGGGCATGCCTCTGTAGGAGCTCCTGGTGCACCAGGGACCTCCCACAGGGCTGGCATCACCCCCTTAGTGAGCCCATGGGAGGCCACAAACCCTGAGGGCAGGGACCCTTCACTGACCTGAGTTGGCAGCAGCTCTGCCTCAGAGCTCGGCTTCCTAAGCTGTCAGATGGTGGGTTGAGCCACATCAGAGATTTTCAGGTATTCGTGTTGTAGCCACAGAACCCTCATCCAATTGAAATCAAAACCTTTGTGCCAGGCGCAATGGCTAACGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTTCTTGGACCCAGGAGGTAGAGGTTGCAATGAGTCGACATCTGGCCACTGCACTCCAGCCTGGGTGACTGAAACTGTCTCCAAAAAAAGAAAAAAACCCCTTTGGAAATAGCTGCTCAGTGGAAACGGGAATGGGGTCCTGTTGCACCAACATGAAGGCCCCCTCCCCAGACCTGCAGAGCGTTAGTGCTCTGGGGTACCCTGTGTGCTGCGTTCAGGCAGTCTGGGGTCTTTCAGCTCTAAAATAAAACGGATTTGCACTCACACCCCTCCCTACCATTCCCAGCTTTCTCTTTCCTTCTTTGCCCTTCTGACAG
Seq C2 exon
GGACAGTTTCCGGATCTTTCAGAAGCTGTCAGAGATCTTCTCAGATGAGAACAACTACTCATTGAGCCGGGAGCTGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-RALGDS:NM_006266:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(11.0=100),PF139001=GVQW=PU(4.7=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCGGATCCTCAAGAACT
R:
CTTGATGAGCAGCTCCCGG
Band lengths:
188-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)