BtaINT0122024 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103133705-103134340:-
Coord C1 exon
chr11:103134237-103134340
Coord A exon
chr11:103133790-103134236
Coord C2 exon
chr11:103133705-103133789
Length
447 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCCACTTTCTCTCCTCCAGGGA
3' ss Score
11.4
Exon sequences
Seq C1 exon
GAGTGCCGGGTCCTCAAGAACTTCTCCTCCCTCTACGCCATCCTCTCTGCCCTGCAGAGCAACTCCATCCACCGGCTGAAGAAGACGTGGGAAGAGGTCTCCAG
Seq A exon
GTGGGCAGCCCTCTCCCCACAGGGGCTCCGAGGGCCCTCAGGCGGGTTTGGGGGCTGGCCCCCAGTGAGCCTGGGACTTGCCAGAACGTGCGGCCTCTGTGGGCGGGGTCCCCCAGGGCCCACTGGCCTTAGGCCTGCAGTTCTGCCTCGGGACTCGGTTTCCTTCTCTGCCGGGTACTGGATTGAGCCTCACTGGAGGTTTCTCTGTGTTTACCTCACAGCCACACAATTCTGTCCACTTAATATCAACATAGCACCCCCTGGTCTAACGGCTGTGGGGGGCCCGGGTGAGCCACAAGAGCCCGTCCCCAGGCGCGAGGAGCCCTTAGCGCCCAGTGTAACCCTGTTTGAAAACCATTGCAGGCAGAGGGGGTCTCTGGGTCCTTAAATATTTTGCCCCCGCGCCACCCCCAACACACACACCATTCCCCACTTTCTCTCCTCCAG
Seq C2 exon
GGACAGCCTCCGCGTCTTTCAGAAGCTGTCAGAGATTTTCTCGGACGAGAACAACTACTCCCTAAGCAGAGAGCTGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194:ENSBTAT00000032653:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development