MmuINT0132942 @ mm9
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127571184-127572163:-
Coord C1 exon
chr10:127572053-127572163
Coord A exon
chr10:127571265-127572052
Coord C2 exon
chr10:127571184-127571264
Length
788 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
CATTGTTTTTGTTTTTGTAGTTC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACCCAGCAACTGGGTCACCTGTCACTCAACAGTCTGGGCACG
Seq A exon
GTAAAGGATTGTCTGTGGTTATTAACCCTGCAGAATAAGAAGTGCCTAGGAAATGCTCCTTGGTACCTGTGGTTACGCAGGACGCAAGTGTGTCAGGGTCAGCAAAGGCAGGCTCAGAACTGCAGTAAATGCTTCTAATCCTTATACTCAGGAGGCTGAGTCAGGAAGACTTAAAAGTTCCAGGCCAGGCTGGAGAGATGGCTCCGTGGTTAAGAGCACTGACAACTCTTCCAGAGGTTTGGAGTTCAATTCCCAGCAACCACATGGTTGCTCACAACCTATCTGTAATGGGGATCAGATGCCTTCTTCTGGTGTATCTGAAGACAGCTACAATGTACTCATATAAATAAAATAAAATAATAAATCTTAAAAAAAAGTTCAAGGCCATTGATAAACAGAAAAGAATCAGTAAGCTGGGGATATACCTTCCTGCCTACCTCTTACCTGCTTCCCAGTCACGGAACTAAATGTGGTTTAAACATTTGTGAATTTGCTTAGGCGCCAGTGCATATCTCCTAGAAGAGCTCATCAGAACACTGAAAGGGAAGGGATGAAGCTCAAGGCTCTTTTAGGTCTGACTGGTGCAGGAGAGCTGGTGGCAGTGAGTTGAGGGTGTGGAGGAAGAGAGGGAACGCAGTGAGGGAGGGACATCAACGTGTCTCTAGCTGGCATCCTCGGGCACTCCAGGGACATTTTAAAGAAGCACCCACAACAATAAAGGTCTCTGTGTTTTCTGAAGCTCCTGAGGGCTTTAAACTAGCTGAGAACCATTGTTTTTGTTTTTGTAG
Seq C2 exon
TTCATGCCGGCAGCTGCTGCTATGCATGGGGCTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-Rbms2:NM_001039080:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTTCTGACACCAGGGA
R:
TCAGCAGAAACACTGGAAGAAGG
Band lengths:
190-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: