HsaINT0138667 @ hg19
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56981338-56982158:+
Coord C1 exon
chr12:56981338-56981448
Coord A exon
chr12:56981449-56982077
Coord C2 exon
chr12:56982078-56982158
Length
629 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
GTTGATGTTTCTCTTTCTAGTAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGATGGGACCCCTTACCCAGCAACTGGGCCATCTCTCCCTCAGCAGCACAGGCACG
Seq A exon
GTAAAGCAGGATATTTCTGATTGTAAACTCTCCTACTGAGCAAGGCATACCTGTGTAATACTCTTCAGCGTAAGTAACTTATGAATAATGATGGAATTACTTCAGTGTCATCCGGGGCACACTCAGAACAGGACATAAACTACAATGGTAGTGCTCCATGAGCCAGGAATACAGCCATTCTGCTCCCCAGCCCACCCCTTTTAACTGATTCCTACTCATGCACCTTGTGAATAGTGCTTCTGTCTGCATATTAGTTTAAGATACACACACGTCCTAGGAATCCTCATCAAAATAGTACCTGGAAGGATGGAGGAAGCTCATTAGGTTTCTTTTAGGCCTACTGCATTCCTTTTTGCATAGAAAGGGCTCAAGGGTAGAGAAGGGAGTGTGTTGAGGAAAAGCAGAAGAAAGTCAGGAAAGAGGAGGAAAATAAGTCATATAGGGAGACGTCTCCCTAACAGTGTACTTTAGAACCACCTGAAGTGCTTTTAAGATGCAAATGCTCAGACCAATTAAAATAGAATCTCTGGGGTAGAATACAGGTGTCAGTATTTTTTTTAAAGCCCCTCAGCTGCTTCAAATGTAGCCAAAAATCACTGCTGTAAGCCTGTTGATGTTTCTCTTTCTAG
Seq C2 exon
TATATGCCGACGGCTGCAGCTATGCAAGGAGCTTACATCTCCCAGTACACCCCTGTGCCTTCTTCCAGTGTTTCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-RBMS2:NM_002898:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAGTTCTGACACCAGGG
R:
TCGACTGAAACACTGGAAGAAGG
Band lengths:
191-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)