DreINT0125491 @ danRer10
Intron Retention
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1911956-1912688:+
Coord C1 exon
chr11:1911956-1912066
Coord A exon
chr11:1912067-1912610
Coord C2 exon
chr11:1912611-1912688
Length
544 bp
Sequences
Splice sites
5' ss Seq
ACGGTTGGA
5' ss Score
2.8
3' ss Seq
TCTTGTGTTTTTCTCTTCAGTAT
3' ss Score
9.97
Exon sequences
Seq C1 exon
GGTGCTCTTTTGACCCAGGCTCTGGATCACCAAATGTCCCTCCAGTCCTCGTCTATGATGGGGCCGTTGACCCAGCAGCTGAGTCACCTGTCCCTCGGCAGCACCGGCACG
Seq A exon
GTTGGAGATTTACCTCAATAAAGCTTGGCTCACACTGTGCTCATCTAAAATAAATGCAGAAATAGACCCTTTTCACATTTCCAGCTTTCTCAGTCATCATAGTTGGGTAAACTCAGAGCACAGTGAATAGGAGAGAACAACAAATCATTATTTTACAATCCTATTTGCTGAAGTAATGACACAAAAACTCAGCAATGGTGTTATCAAGCCTTTCAGAAAGAGGAAAACAATAGTGTGAGACTGATAATGGCATTGAAGAATTGAGAGTGCATTGAATATTAAGAACTTTAATAAACCGATGTGCTTGTGCACTGGAATAGCAAAGAGAAGAGGAGGAGTGCAATAAATAAAACCCCCGCCCACTACTTAATATTCAGTTTCTGTTGGAAATGCGTCATCCTACTGGGATAAATCTCCAGAGAATTGACTTTTGATTGAGGTGGACTTTAATAACGGCACAGTGTGAGTCCGTCTGAAGAGTTTGTGATGCTGATCTGTGTGTGTGAATGTAAAAGTGATGCCGGTCTTGTGTTTTTCTCTTCAG
Seq C2 exon
TATATCCCGAACGCAGCTCTGCAGGGCACCTATATCCCTCAGTTCACCGCAGTGCCTCCCTCTAGTGTCTCATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179:ENSDART00000065470:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTTTTGACCCAGGCTC
R:
TGAGACACTAGAGGGAGGCAC
Band lengths:
182-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]