RnoINT0125330 @ rn6
Intron Retention
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2555139-2555908:-
Coord C1 exon
chr7:2555798-2555908
Coord A exon
chr7:2555220-2555797
Coord C2 exon
chr7:2555139-2555219
Length
578 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
AACCATTGTTTTCTTTCCAGTTC
3' ss Score
8.47
Exon sequences
Seq C1 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACTCAGCAACTGGGGCACCTGTCACTCAACAGCCTGGGCACG
Seq A exon
GTAAAGGGTTTTCTGGGATTATTAACCCCTTCGGAATAAGAAGCACCTGTGAAAATGCTCCTTGGCATCAGTAGTTATGCGGAACGCAAGTGTTTCAGGGTCCAAGAAGGCACACTCAGCACTGGGGTAAATGCCTCTAATCCTTGTACTCGGGAGGCTGAGGCAGGAGGACTGTCAAAAGCTCAAGGCCATTGGTAAACCGAAAAGAACCTGTAAGCTGGGAATGTAGCCGCTCTGCCTTCCTGCCTACCTCATACCCGCTTCACAGAACTAAGTGTGGTGTAAACACTTGTGAATTTGCTTAGGTGCCGGTGCGAGTTTCCTAGAACAACTCATCATAACACTAAAAGGAAAGGGATGAAGCCCAGGATTTGTTTAGGCCTGACTGGTGTAGGAGAGCTCATGGTAGGGAAGTGAGAGTGTGGAGGAAGAGACAGGGAAGGAAGGAGGGGTTAACATGTCTCTAGCTGGTGTCCTTGGTACCCCAGGAACATTTTTAAGCAGTACCCACAATAAAGGTCTCTTTTCCAAAGCTCCCAAGGGCTTTGAACTAGCGGGAACCATTGTTTTCTTTCCAG
Seq C2 exon
TTCATGCCAGCAGCCGCTGCTATGCAAGGAACTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076:ENSRNOT00000048848:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTTCTGACACCAGGGA
R:
AACACTGGAAGAAGGCACAGC
Band lengths:
182-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]