BtaINT0123464 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57168070-57168859:-
Coord C1 exon
chr5:57168749-57168859
Coord A exon
chr5:57168151-57168748
Coord C2 exon
chr5:57168070-57168150
Length
598 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
GTCAATGCATCTCATTCCAGTAT
3' ss Score
4.72
Exon sequences
Seq C1 exon
GGTTCAGTTCTGACACCAGGAATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGGTGGGACCTCTTACCCAGCAGTTGGGCCACCTCTCTCTCAGCAGCACGGGCACG
Seq A exon
GTAAAGCAAGATATTCCTCTTATAAACTCCTGCCACACAAGGAACACCTGTGTAAGACTCTTAGGTTTAAATACTCTTGGATAAGGATGGGAATGACTTCACTGTCATCGAGGACACACTCAGAAAAGGAGATGGACTGTGAGCGAGGAATACAGCCTTCTACTCTGAAACTCATTCGTTTTAACTGATTCCTCTTCATGTAACTAAAGGATCAGTGCTCCTGTCTACGTGTTATCTAGTAGGGGTTCACACACATCTCTTGAAAGCCTTATCAGAATAGTAATAGGAAGAATGGGTGAAGCCTGATAGGTTTCTCGAAGCTCAGGTGCATTCTGGTTTGTGGAGGAGTGCTTAAAACAGAGAGGGCAGTGCGTTGAGAAAAAGCAGAAGATGGGAAAGAGGAGGAAAAGCAGTCATGTAGGTAGAAGTCTCTCTAAGCCAGTGTACTTCAGAGTCATCGGAAGTGCTTTTAAAAAGCACAATTAAATTAGAATCTCTGGAGAGGGGACATAGGCACTTACAGTTTTTAAAGCTCCCCAGGTGTTTTAATTGTAGCCAAGAATCACTGCTCTGAGCCTGTCAATGCATCTCATTCCAG
Seq C2 exon
TATGTGCCAACAGCTGCAGCTATGCAGGGAGCTTACCTCTCCCAGTACACCCCAGTGCCTTCTTCCAGTGTTTCAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAGTTCTGACACCAGGA
R:
CAACTGAAACACTGGAAGAAGGC
Band lengths:
190-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]