MmuINT0132950 @ mm9
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127574976-127575253:-
Coord C1 exon
chr10:127575174-127575253
Coord A exon
chr10:127575086-127575173
Coord C2 exon
chr10:127574976-127575085
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTATGTTTTCTCTTGACAGCAC
3' ss Score
8.86
Exon sequences
Seq C1 exon
GATGGAGTCAACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAGTATATAAAGACACCCCCTGGAGTAGCAG
Seq A exon
GTGAGGCCTCTGGGACTCGGGCTGGGAGCCATTGGAGGAATGGGTACTGCCCCGTGGCCCAGCAACTGTGTATGTTTTCTCTTGACAG
Seq C2 exon
CACCTTCTGACCCTTTGCTTTGCAAATTTGCTGACGGTGGGCCAAAGAAACGACAGAGCCAAGGAAGATACGTGCAAAATGGACGGGCCTGGCCAAGGAACGGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-Rbms2:NM_001039080:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.595
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGCCATCATCACCCAC
R:
CATGTCTCCGTTCCTTGGCC
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: