DreINT0125497 @ danRer10
Intron Retention
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1906330-1906620:+
Coord C1 exon
chr11:1906330-1906409
Coord A exon
chr11:1906410-1906510
Coord C2 exon
chr11:1906511-1906620
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
AAATAAATAAATGACTTTAGTGC
3' ss Score
0.6
Exon sequences
Seq C1 exon
GATGGAGTCCACAGAGAAATGTGAAGCTATTATTCAGCATTTTAATGGAAAATATATCAAAACCCCACCAGGAGTTCCAG
Seq A exon
GTAGATCATCTAAATGTGTTTAATTATTGTATAGAGAATTGATGAGAACATGAATACATATCTAAAAATAAATAAATAAATAAATAAATAAATGACTTTAG
Seq C2 exon
TGCCTACAGAACCGCTGCTATGCAAGTTTGCAGATGGAGGACAAAAGAAGCGACAGAATCAGAACAAATACCTGCAGAACGGACGATCCTGGACTAGAGACGCTGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179:ENSDART00000065470:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.703
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGTCCACAGAGAAATGT
R:
TCAGCGTCTCTAGTCCAGGAT
Band lengths:
186-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]