RnoINT0125327 @ rn6
Intron Retention
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2558462-2558739:-
Coord C1 exon
chr7:2558660-2558739
Coord A exon
chr7:2558572-2558659
Coord C2 exon
chr7:2558462-2558571
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGTGTTTTCTCTCGCCAGCAC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GATGGAATCCACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAGTATATAAAGACGCCCCCTGGAGTAGCAG
Seq A exon
GTGAGGCCTCTGGGACCCGGGCTGGGAGCCACTGGAGGAGTGAGCGCTGAACCCATACCCAGCGACTGTGTGTGTTTTCTCTCGCCAG
Seq C2 exon
CACCTTCTGACCCCTTGCTTTGCAAATTTGCTGATGGTGGGCCAAAGAAACGACAGAACCAAGGAAAGTTTGTGCAAAATGGACGGGCCTGGCCAAGGAACGGAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076:ENSRNOT00000048848:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.649
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGCCATCATCACCCAC
R:
TATCTCCGTTCCTTGGCCAGG
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]