MmuINT1029672 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128137920-128138197:-
Coord C1 exon
chr10:128138118-128138197
Coord A exon
chr10:128138030-128138117
Coord C2 exon
chr10:128137920-128138029
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTATGTTTTCTCTTGACAGCAC
3' ss Score
8.86
Exon sequences
Seq C1 exon
GATGGAGTCAACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAGTATATAAAGACACCCCCTGGAGTAGCAG
Seq A exon
GTGAGGCCTCTGGGACTCGGGCTGGGAGCCATTGGAGGAATGGGTACTGCCCCGTGGCCCAGCAACTGTGTATGTTTTCTCTTGACAG
Seq C2 exon
CACCTTCTGACCCTTTGCTTTGCAAATTTGCTGACGGTGGGCCAAAGAAACGACAGAGCCAAGGAAGATACGTGCAAAATGGACGGGCCTGGCCAAGGAACGGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.595
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGCCATCATCACCCAC
R:
CATGTCTCCGTTCCTTGGCC
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types