BtaINT0123471 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57174964-57175284:-
Coord C1 exon
chr5:57175205-57175284
Coord A exon
chr5:57175074-57175204
Coord C2 exon
chr5:57174964-57175073
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTGTTTTCTCTCTCGGCAGCCC
3' ss Score
10.49
Exon sequences
Seq C1 exon
GATGGAGTCCACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAG
Seq A exon
GTGAGGCATCTGGGAATCAGGCTGAGAGGCCACAGGTTATGACTTCTGTGAAGATTCTGGAGGCTTTTTGCATGAGTGAATGGGCTAAGTGAGGTGGGACTCAGCTGCCTGTCTGTTTTCTCTCTCGGCAG
Seq C2 exon
CCCCATCCGATCCCTTGCTTTGCAAATTTGCTGATGGGGGTCCAAAGAAACGACAGAACCAAGGAAAATTTGTACAGAACGGACGGGCCTGGCCAAGAAATGGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.784
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCACAGAGAAGTGTG
R:
TGTCTCCATTTCTTGGCCAGG
Band lengths:
186-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]