DreINT0125510 @ danRer10
Intron Retention
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25830285-25830555:+
Coord C1 exon
chr23:25830285-25830364
Coord A exon
chr23:25830365-25830445
Coord C2 exon
chr23:25830446-25830555
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CGACTGACATGTTTGTCAAGTGC
3' ss Score
1.13
Exon sequences
Seq C1 exon
GATGGAATCGACTGAAAAATGTGAAGCCATCATTCAACATTTTAATGGCAAATACATCAAGACTCCTCCTGGAGTAGCAG
Seq A exon
GTACTGTATATGGGTAAAGAAGACTGTGTAATTAATTATCATTATAACAGATAAATAATGACGACTGACATGTTTGTCAAG
Seq C2 exon
TGCCTACAGAACCATTGTTGTGTAAGTTTGCCGACGGAGGACAGAAGAAACGTCAGAATCAGGGGAAATATCACCAGAACGGACGGCAGTGGTCGAGAGAGGGTGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150:ENSDART00000060059:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.676
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTGAAAAATGTGAAGCCA
R:
TTCACCCTCTCTCGACCACTG
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]