HsaINT1029008 @ hg38
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56581184-56581508:+
Coord C1 exon
chr12:56581184-56581263
Coord A exon
chr12:56581264-56581398
Coord C2 exon
chr12:56581399-56581508
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTGCCTTCTCTCTCGGCAGCCC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GATGGAGTCCACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAG
Seq A exon
GTGAGGCATCTGGGGCTCAGGCTGAGAGGGCCACAGGTTGTTACTTCCAGTGAAGATTCTGGAGCAGCTTTGCATGACTGTGCCTGGGCCACATGAGGTGGGACTCAGCTGCCCATCTGCCTTCTCTCTCGGCAG
Seq C2 exon
CCCCATCCGATCCCTTGCTTTGCAAATTTGCTGATGGCGGGCCAAAGAAACGACAGAACCAAGGAAAATTTGTGCAAAATGGACGGGCTTGGCCAAGGAATGCAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067:ENST00000262031:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCACAGAGAAGTGTG
R:
TGTCTGCATTCCTTGGCCAAG
Band lengths:
186-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains