MmuINT0140016 @ mm10
Intron Retention
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83629384-83634793:-
Coord C1 exon
chr15:83634671-83634793
Coord A exon
chr15:83629501-83634670
Coord C2 exon
chr15:83629384-83629500
Length
5170 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTGTCTCCCTGTGACCACAGACA
3' ss Score
7.48
Exon sequences
Seq C1 exon
ACATCAACGAGTGCTTGATGAATAACGGAGGCTGCGACCACTTCTGCCGAAACACCGTGGGCAGCTTTGAATGCGGCTGCCAAAAGGGCCACAAGCTACTGACGGACGAGCGGACATGCCAAG
Seq A exon
GTAAGCGCCCACCAGACCCCAGGAACCACTCACAGTCACTGGCCATGGTCAATGACCCTTTCTTCCAGATTCTTACAGACTCCTGGAGAGCAAAGCGCTCAAAGTGGGTAGCTCAAGATGCAGAATTCTCTAGAACTTGGTGCCTGTGCTTGTTGACCTGTCTTTCATGACTTATAGCCACACAATCCAACCCCTGCCTCCTGTCCCCTTTATGGATAAGAAAAGATCTGGAAATGAATGGTGGTGCTTGCCCCAATTCCAGCTGGAACATAATTGTAAGATTGAGTCTACACAATGAGACATTATCTAAAATGCATATTTATGGGAAACTAAGGCCCACTGGCCCTCCCTTCCTATTTACACCTTCCCTGTGCCGGCTCTGAAGGCACAATACTGCCTTCTGGTGGAAGACATGGCACATCACAGACACTTTCCAACAGTGGTTTGGATAACTCAAACCTAGTGGCCCCTAGGATGCAGGGATCCCAGGAGGAGGGTGATCAGGGAGATTCCTGGGAAAGCCACTGGTGACATGCTGGACAAATCATTTCCCAAGAGAAGCAGGAAGTTGCACCCTTAGGAGTGGGAGTTTGGGGTACACGAGACCTCAGTGGGGCTGAACAGGGCCATTGGGGAGGAACCAGGTTCCCTGGAGGACTAACCTCAGGAGAAAACATGAAACACATCAGGGCCTCAGTTCTAACTCTGACTCTCCTATCAGGGTCTGGCTGTTTTGTTCCCAGGAGGCCCCAGTAGTTTCAGAGTAGGCAACCCTTAAGTTATTAGACTGGCAGCCTCTGCGTTTGAACAGCGAGGCCCTCAAGTCCCAGGTCCTGGTAAGAGGAGGTCAGTTACCAAGGTCAATGTGACCTCCGACTCACTGGGGCAGGGCTCCAACCACAGCCTCCCCTCATCCAAGCCTCGTTCCCCTGGAAAGCATCCTGGCCCCTCTCCTCTGGATGCAGGCTGGTCAGGCTCCCGGCAGCTGGCCAGCCCTGAGAGCTCCTCCACACTCTGGTTTTGTCTCCCTGTTAGTTTACCGAGCTCTGCAAAGGGCCAAGAGCATCAATTCTCAACCTGTGAGCCACAAGCCCTTTGAGAGTCAAAGGACCCTTCCACAGGGATTGTATGTATCTCAGATATCCTGCATATCAGATGTTGTACATTATAGCTTATAACATAGCAAAATTATAGTTATGAAGTAGCAATGAAATAATTTTATGATTGGGGGTCACACAAAATGAGGGACTATATTAAGAAATAACAGCATCAGGAAGGTTGAGGGCTGCTGGCCAAAGATCCTTTGACTTTGAATCCTCAACTGCCCCTGAGGGAGCAGGCAAGGTAGTAGGCGCACTGAGGCTCTGTATCACAGCCTTGCTAGCATCCTCCCTACCCAGCCCCATTTGTGTCTCCACCTTTTTCCAACTCATCTATCTGAAGACTCCTCAGGTCCAAGCTCCTTAGGGACCCTCGTACTATCCCAGTGCCCTTTGACCTTCATACAGCCTCCTGGCCTCCCTGCCTTTGCCTGGGGCATCCTCCTCCATTCCAAGCAGGACCTATCCGTGACCCAGGAGGTCCTCCCAGACCCCAGGGAGACCTCACACCCTCACTTGAGCACCCATGGCACAGCATCTTCCTTGCATTAGTGTCTTATGAGCACATACATAGAGGTATGACACCACTAGAGCTAGAGCCAATGTGTTCAAAGAACAAACTCTTAACTGCTGTGCCTGTGGAGGGTCAGGTCAGTGTCTATTTCACAAGCTTCTCAGGAGAAATGGATCCAATGCTTATAGGAAACAAGTCTATCCTAGGCACAAACTCTAAGAGAAATAACTATTATACATGAGTCACTGTCCTGTTACAATGAAGAGACGCCATGACCAAGACAACTCTTATAAGAGAAATCATTTAACTGGGGGCTGGCTCATAGTTGCAGAGGGTCAGTCAGCCCATTATCATCGAGGAGAGGAGCATGGTGGCAGAGGAGTAGCTGAGACCCACCTCCTGATCTGTAGACAGTTAGACTGGCCCTGATGTAGGTTTTTGAAACCTCAAAGCTCATCCACAGAGACACACTTCCTCCACCAAGGCCACACCTCCTATTCCTTATAATCTTTTCTAACAGTTCTGTTCCCTAGTGACTAAGTATTCAAGTATCTGAGCCTGGGGGGGGGGGCACTCTTATTCAAACCACCACATTCTACTCCCAGGCCCCCAAAGGCTTGTAGCCATGTCATAAGAAAAAATGTACCAGGCAGTGATGGATCATTGCTTTAATCCCAGCACTCAGGAAGAGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGTCCAGCTTGGTCTACAGAGTGAGTTCCAGGAAAGTCAGGGCTACATATTGAAACCCTATTTTGTCAAAAAAAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGGAAGGAAGGAAGGAAGGAAAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAAGAAAAATGCATTTAGTTCAACTTCAAAAGTCTCCATAGTCTTTCACAGTCTCAAGACTGCTTAAAAATCCAAAGCTGTTTCTGAGACTCAAGGCAAGCTCTTAAGTGTAACCTATAAAATCAAAATTAAAAAAAACAAACAGATCACATACTTTCACTAGACATTACCAGAGAAACAAAGGGGACCCTAGTGAGGAAGAACTGGACCAAAGCAAAAGCAAAAAAGCAGCAGGCAGTCACCAAACTCTGTGTCGCCATGTCTGATGTCAGATCTCTTAACTTCTTTTAGCTCTGTTGACTGAAACACACCTCTGTGTGTCTCTGTCTCTCTGTGACTCTGTCTCTCAGTGTATCTCTTAATGCCGTTGTCTCTGCCTCCCGCTGGCTGGTTCTACTCCCTGTTAGCAGCTCTCCTTGGCAGGTATTCCCATGCTTTGGTATCTCCAACATTTTCGGGTCTCCATTGAAATCCAGGTTTCCTCTTCACAGCTCCATACAATAGCCTCTCTGAGCCTCCAAGCAGGGACAACCCTAACACATGCCTGCCTGGCCTCAGCAGCTTCCTTACAGTTCCACCCATGGAGGTGGGAGTGGGGGCACGGCGCAGCGATTCTACAATCCCTTTCTTGTATTCTCAACTCTAAAGCCTGAACCAATGTTCAGCCGATGTTGCCAAGTTCTGCTTTGGGGGGCTGGGGAACTTGGCCCCCTGTTCAATAACATTTGAATCAACTCTCCGGGTTGATGGTTCCTTCCCCAGCTTAGGCTGTCCTTTTTACAACTTGGAAGCTTAGCTGGGAGGGGCCTTGCCCCGAGGTCACCACGCCCTTTATTCCATTCAGCATCTGCTTTCCTTTAAACTTTTGATCCCCTGGCGCTCAAGACTTGGCTCCAATATCACCTTTTCTGGTGTCCTTTTCTCCCCGTGCCCCACGTATGTGTTTCTCTTTGTCCAGCTTGTTTCTTTCCATTAGAGATCTTCATAAGAGTGACCACTAGCAACCACATCAATAAAACAGTTGATACCAGGTTGTCTTGAAATCCCCTCTGTCATTAATCAAAAAACAAACAAACAAACAAACAAACACTTTAGTTTAACGCCAGGTAGGTTTCTAGGACAAGGGCAAAAAAGCAGCCACACTTTGCCAAAATATCCCAAGAATGTTCTCTGAGCCACTTATTAATATTCTTACCTTTCGAAGTTTATTGAGCTGGGCCCCCACCATTGAAATCACCCTCAGCCCTGTCTTCCATGTTCCCACAGGATGGCCCACTAAGTCCCACTTAGAGCATTCAACTGCTTTTCTAGTCCAAACTCCCAAAATCTTCCATAGTCCTCCAGCAAATAGTAGAGTCAGGCCTGTTACAGCAATACCCCAGTCCCCGGTACCTATTATGGGACGGCTGATGTGCAGGCAACCCATGACTCTCCATTCCCTTTGGACTTTGGCTGCCCAAGGAAATTCATAGTCAAATGGCTTGTGCTATCAGAGCTACTTTTTAAAACCTTATGTGTAGTATATTCCCTCTCCCCTCTTCTATCGGTGCCACATTCCTAACCTCTCCGAAAACATCTTCGGGTGGCAAGAACACACTTTGGTCAACATCACGAGTTTGTATTCCATTTCAGCTTCCTCTTGAGGGTTCTTAAGCAAGTCCCAGTCATTTTCCTTCCTGGCATATGTACCAAGTTGCTTTCCTATAGAGGCATGGCACCTCAGGCTTCTGATCCCAGTACTTGGGAAGCAGAGCAGGAGTTAAAGCCAGCTCGAGCCACATGAGACCCAGCCTCAGAAGTAAAACAGAAACAGATGGGAGGATGGCCCAGGAGGAAGTGCTTGGTGAGCAAGCTTGAGCATTGCATGAGCATTGCATGAGCACTGCGTGAGCATTGCACATCCCCAGCAGCCATGTAAAAGCCAAGCATGGCAACACATGCCTGTAAACCCAGCATGGCGACCAGGGGAGTCACGAGGACCTCTGGGATGGGCAAGCCTGCCAGTATAGCAGACAGCAAGCTTCCCATTCAGTGAGAGACCCTGTATAGAAAATAAAGATAAGGCTGCAGTGCTGGCTCAGGGTTAAGAGCATGAACTGCGCTTATAGAGGGTCAGTTCCCAGCACCCACATCAGGAGGCCTCTAACTCCAGCTCCTGGGGCTCTGGCGCCCTCTGCTGTTCTCCTTGGGTACTCACATACACAAAATTAAAAACAAAACATTTTAAAACAGGTAATTAAGGTGGAGGAAGACACCCAACATTGACCTCTGGCCTGTATGCATATGCACAGGTAAACACACATGCAAACGCATGCTAAAGCAAATGTAAATATCTTTCCTAACCACAGGTGAATGAGATAGTAACAGAGATCCATAATAATCCACTTCCATAACAGACATGAGGGGATTCTACCCCAGCAACAGGGCTAACAGAAACAGTGTGGAAAAGTAAGCAACGAGAAACTTAATAGACTTGGAGACTGTGCTGCGCCTCAGGACCCAGGAACCATCCAGACAGGATGTTCCGTGGGTGACAGGCCTGCCTAGTCACCTCAAGCTGACATGCCACCCTGTCTCCCTGTGACCACAG
Seq C2 exon
ACATTGACGAGTGTTCCTTTGAGCGGACCTGTGACCACATCTGCATCAACTCCCCCGGCAGTTTCCAGTGCCTGTGCCGCCGAGGCTACACACTCTACGGGACAACCCACTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763:ENSMUST00000076060:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types