RnoINT0131910 @ rn6
Intron Retention
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124525240-124530692:-
Coord C1 exon
chr7:124530570-124530692
Coord A exon
chr7:124525357-124530569
Coord C2 exon
chr7:124525240-124525356
Length
5213 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTCTCCCTGTGACCACAGACA
3' ss Score
7.48
Exon sequences
Seq C1 exon
ACATCAACGAGTGCTTGATGAACAACGGAGGCTGCGACCACTTCTGCCGAAACACTGTGGGCAGCTTTGAATGCGGCTGCCAAAAGGGCCACAAGCTACTGACGGACGAGCGGACATGCCAAG
Seq A exon
GTGAGCATGCACCCAGCAGACCTCAGGAACCACTCGTAGTCACTGGTCACGGTCAAGGTCCCTTTCTTCCAGGTTCTTTCAGACTCCTGGAGAGGAAAGCACTCAAAGTAGGTAGCTCAAGATGCAGAATTCTCCAGAACATGGTGTCTGCTCTTGTTGATCTGCCCTTCGTGACTTAGAGCCACACAATCCAACCCCTGTCTCCTGTCCCCTTTATAGATGAGAAAAGATCTGAATATGGTGCTTGCTTGCCCCAATTCCAGCTGGAGCATAATTGCAAGACTGAGTCTAGCCTGGGCTACAAAGTGAGACCTAATCTAAAATGCGTGTATATGGGAAAATAAGGCCCACTGGCTCTCCCTTCCTATCCATGCCTTCCCTGTGCAGGCAGCCCAGCTCTGAAGGCTCAACACTGCCGTCTGGTGGAAGACGTGGCACATCACAGCCACTTCCCTACAGTGGCTTGGATAACTCAAGCCCAGGGGCCCCCAGGATGCAGGGATCCCAAGGGAAGGGTGATCCGGGAGATTACTGAGAAAACCACTGGTGACATGCTGGACAAGTCTTTTCCCAAGAGAAGCAGGAGTTGGCCCATTAGGAGTGGGCGTTTGGGGTACACAAGACCTCAGTGGGGCTGAACAGGCCCATTGGAAAGGAGGCAGGTGCCCCAGAGGACCAACCTCAGGAGAAAACATGAAAAGCATTAGGGTCTCGGTTCTAACCCCAACTATTCTAACAGGTCTGACTGTTTTGTTCCCATGAGGCCCCCATAGTTGCAGAGTAGGCAACCCTTTAGTTACTAGACTGGCAGCCTCTTCCTGTGGGAGTGTCTGAGCAGTGAGGCCCCCAAGTCCCAGGTCCTGGTAAGAGGAGGCCATCAAGGCGTACCAATGTGACCTCTGACTCACTGGGTCAGGGCTCCAACCACAGCCTCTCCTAAGCCAAGCCTCGTTCTCTTGGATGAGCATCCTGGTCCATCTCCTCTGGATGCAGGCTGGTCAGGATCCCAGCAGCTGGCCAACCCTGAGAGTTCCTCCACACTCTAACTTTCTCTCACTGTTAGTTTACCTGTGGAGGGCCAAGAGCAGTTCTCAACTCGTGAGAGTCGAAGGACTCTTTTACAAGGATCGTATATCAGATATCCCGCACATCTGATATTTACATTATAGTTCATATCATGGCAAAATTACACTTATGAAGTAGCAATGAAATAATTTTATGGTGGGGGAGGGGGTCACACAACCTGAGGGGCTGTACTAGAGAATCACAGCATCAGGAAGGTTGAGAGCCACTGGCCAAAGATCTTTTGACTCTGAATCCTCAACTACCCCTGAGGGAGCAGGCAAGGTAGTAGGCACACCAAGGCTTTGCACCAGGGCCTTGCTAGCATCCTCCCAACCCAGCCCCATTGTGTCTCCACCTTTTTCCAGTTCATCTATCTGAAGACTCCTCAGGTCCTAGCTCCTTAGGGACCCTAGTACTATGCCACTGCCTTCTGTCCTCCATACGGTCCCCTGGCCTCCCTCCCTGCCTTAGCCTCCTCCATTCCAAGCAAGATCCATCCACAACCCAGGAGGTCCTCCCAGACCCCAGGGAGAGCTCACACCCTCATGTGAGCACCCACAGCACAGCATCTTTCTTGCATTAGTGTCTTATGAGCATACACACACACACACACACACACACACACACCTAATATATATATGTGTGTGTATATATATATGTATATATATATGTGTGTGTATATATGTATATATATGTATATATATGTGTATATATATAATCTCTACCATTAGAGCCAATGTATTCAAAGAACAAACTCTTAATTGCTGTGTCCATGGAGGGTCAGGTTGGTGCCTATTTCGCAAGCTTCTCAGGAGAAATGGACCCCATGCTCACAGGAAACAAGTCTATCCTAGGCATAAACTCTGAGGGAAATAGCTATTATATGTGAGTCACTGTTCTATTACTAGGAAGAGGCACCATGACCAAGGTAACTCTCGTAAGAGAAAGCATTTAATTGGGAGTTTGCTCGTATTTGCAGAGGCTCAGTTCCTCATCAAGGTGGGGAACATGGTGCTGGAGCAGTAACTGAGAGCCACATCCCGATCCATAGACAGACAGTTAGACGGGCCCTAGTGTAGGTTTTTGAAACCTCAGCTCATCCCAGAGAAACACTTCCTCTACCAAGTCCACACCTCCTACTCCTTATAATCGTCTCCAACACTTCTGTTCCCTAATGACTAAGAATTCAAGTATATGAGCCTATGGGGGCCATTCTTATTCAAACCACCACATTCTACTCCCTGGCCCCCAAAGGCTTGTAGCCATATCATAACTAAAAATACACCAGGCAGTGGTGACTCACTCCTTTAATCCCAGCACTCAGGAAGAGGCAGAGGCAGGAGGATCTCTGTGAGTTTGAGTCCAGCTTGGTCGACAGAGTGAGTTCCAGGAAAGCCAGGGCTACATAGCGAAACTCTGTCTCAAAGGGAAAAAAATGAACAATAACAACAAGCAAAAGAAAGAGAAAGAAAAAAGACAAAGAAAAATGCATTTAGTCCAACTTCAAAAGTCCCCACAGTCTTTCACAGACTCAAGACTGCTTAAAAACTCAGTCTCCTCTGAGACTCAAGGCAAACTCTTTTTTTTTTCTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCAAGGCAAACTCTTAAGTGTAACCTATAAAGTCAAAGCAAAGAAGCAGGTCACATACTCCCACATACAGTGGCGCAGAATAGGCTTGACCATTCCAAAAGAAGCCAAAGGGAGCCTAGTGAGAAGATAACTGGGCCAAAGCGAAAACAAAAGCTAGCAGGCAGTTGCCAAACTCTGCAGCTCCATGTCTGATGTCAGGTCTCTAACTTCCTTTGGCTTTGTTGACTGATACACATGTCTCTGTGTGTGTCTCTGTGTGTCTCTCTCTCTCCCTGGCTGGTTCGTCTCCCTGTTAGCGCCTCTCCTTGGCAGGTATCCCATGCTCTTGCATCTCCAACATTTTTGGCTCTCCATTGACATCTAGGTCACCTCTTCACAGCAGCCTCTCTGAGCCTCCAAGCAGGGACACCCCTAACACACTCCTGGCCTCAGCAGCTTTCCTCAGAGTCCCCCGCACCACCCTCCCCATGCAGGGGGAGGAATTCTACAATCCCTTTCTTGTATTCTCCACTCTAAAGCCAGAACCGTGGCCAACGCTGCCAAGTTCTGCTTGTTGGGGCTGGAACTTGGCCCCCTGTTCAATGGCATTCATATCAACTCTCAGTGTTGATGGTTCCCTGCCCGGTTCAGGTCTTCCTTTCTACAACTTGGAAACCTAACTAGGAAGGGTCTTGCCCTGGGATCACCACTCCCTTCCTTCCATTTAGCATCTGCTTCCCTTTAAACTTTGTATCCCCTGGAGCTCAAGACTTGGCTCCAATATCACTTTCTCTGGTGTCCTTTGCTCCTCATACTGTGCACGTGCATTTCTCTTTGTCTGGCTTGTTTCTTTCCATTACAGATCTGCATAAGAGCGACCACTAGCAACCACATCCATCACACAGTCCATACTGGGTTGTCTTGAAATCCCCTCTGCCAACACCATTCATCCAAAACTCTGCAGTTTAGCGGCAGGCAGGTTTCTAGGACAAGGGCAAAAAGCAGCCACAATTCTTTGCCAAAGTATCCCAAGAGTGTTCTCTTAAGCCACTTACTAATTATTCTCATCTTCTGAAGCTTATTGAGCTCGGCCCCCACAGTTCAAATCACCCTCAGCACTGTCTCCCATGGTCCTACCAGGATGGCCCATTAAGTCCCACTTAAAGCATTCAACTGTTTATCTAGTTCAGAGTCTCAAAAAATATTCCATATTCCTCCAACAAACAGCACGGTCAGGCCTGTCACGGCAATACCCCAGTCCCTGGTACCAATTTCTGTATTACGAGATGGCTGGTGATCAGGTAACTCGTGACTCTCCCTTTTAACTTTGGTTGCCCCAGGAAATTCATAGTCAGATGCCATGTGCTGTCAGAGCTGCATTTTAAAACCCTGTAGGTGATGTATTCCCTGCCACCCCTTCTATTTATGCCACTTTCCTAAAATCTGCAGAAACGTCTTCAGGTGGCCAGAACACACTTTGGTCAACGTCACGAGTTCATATTCAATTTCAGCTTCCTCTTGAGGGTTTCCTGGGCAAGTCCCAGTCATTTCCCGCCCTGACATGTGTACGAAGTTCCTTTCTGGTCAAGGTATGGCACCTCAGGCCCATGATCCCAGTCCTCAGGAGGCAGAGGCAAGAGTTAAAGCCAGCCTGAGCTACATGAGACCCAGCCTCAGAAGTAAAATGGAAACAGGATGGGAGAATGGCTCAGTAGGAAGCGCTTGCTGAGAGAATGCGAGGATTTCGCATTCCCAGCAGCCATGTTAAAACCGAGCATGGCAGGCAGCTCATGCCGTAAACCCAGCATGGAGACCAGGGGAGTCAAGAGGACCCCTGGGATGGGCTAGCCAGTCAGTGTAGCTAACAGGGAGCCTCCCATTCAGCAAGAGAGCCTGTATCGAAAATAAAAATAAGACTGGAGTGCTGGCTCAGTAGCTACAAGCATGAAGTGCTCTTGTGGAAGTTTAGTTCCCAGCACCACATCAGGAGGCCTATAACTCCAGCTCCTGGGGCTCTGACGCCCTCTTCTGTCTCCTTTGGGTACTCGTATACACACAATTAAAAACATAAAAAATTTAAAACCGGTAATTAAGGTGGAATATAAATGAGGAAGATACCTCATGTTGACCTCTGACCTGTACGTGTATGCCCAGGTAAACATGGGCATACATGGGTACATACACAGAGGTGCGTGCTCACATACATGTGTATACACACACACACACACACACACACACACACACTAAAGCAAAAGTAAACATCTTTCCTAACCACAGGGGAATGAGTTATTAACAGAGGCCCATAATAATCTCTACTCCTGATATTTGCCCCACCCACTTCCATAACAGACACGAGAGGATTCTACCCCAGCAACAAGGCTAATAGAGACAGTGTGGGAAAGTAAGTAACAAGAAACTTAATAGACCCAGGGACCATCCAGGCGGTCACCTCACGCTGACACCCCGCCCTGTCTCCCTGTGACCACAG
Seq C2 exon
ACATTGACGAGTGTTCCTTTGAGCGGACCTGTGACCACATCTGCATCAACTCCCCCGGCAGCTTCCAGTGCCTGTGTCACCGAGGCTACATACTCTACGGGACAACCCACTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617:ENSRNOT00000017727:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]