MmuINT0145486 @ mm9
Intron Retention
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6059937-6064022:-
Coord C1 exon
chr6:6063938-6064022
Coord A exon
chr6:6060025-6063937
Coord C2 exon
chr6:6059937-6060024
Length
3913 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGCTTATGGCACGCGTGAAGCAG
3' ss Score
-1.48
Exon sequences
Seq C1 exon
GCGCATGACCTTAGCAGACATTGAGCGGATCGCCCCTCTAGAGGAAGGAATGTTACCCTTCAACTTGGCCGAGGCCCAGAGGCAG
Seq A exon
GTGAGTGGTGGGAGTGACTTCTCTCCTGGTGCTTTCCAGAGATACCCAGGCCGCTAGCACGTCCATTGGATTCCCAGCATTGGTTTCTGACTTAACTGTTTTTCCAATTCTGGTCCCCAAATTCAGGCATTTTGAGGAGGCTGAAAGGGGAGTTGTTGAGCAACCTTCTGGTGAACAGATACGAGCATGTGTTTCTTAGAAAGACGGGGCTGTGGCCCCAACAATGGAAATCCCAACACTCCAAAAACAAGTAGTTCTTTTCTTCCTCACATCTGGTACTGAGGGATATGGGCATGAAGCACTTGCTCTTGTGACTGTCCCCAGCAGCATCTGGCATTGCTAAATGAACGATAACGTTGCACCTCAGTGGGGTACTGTCAGAGCGTTGTCTAACAGCCATGCCTTCCGTTTTTTTTCTGAGTATCGAAATGAGATAATTTTGTTTAGTCTGGAGTCATAGTTCAGAGGCTTTTAGACCTATTTTCTCTGTGAAAGGATTCATAAGCTATGTGGAAACAATGTTAGGAATGCTAGGTTTTATTTTATGGTTAACAGAAGCCCATGTCTCAAAGTTGTGGGAGTCAGAAACTTAAGACACAGGACCTCCTTGCTCTGTAGCTGGGCCTGAGAGAGCATGCCTTCATTGCATGGGCTATGCCTGCATGGTGCTTGTAAAATAAATCCATGAACAGACAGAATGTCTTTTTTTTTTTTTTCTTTTTTCTTTTTTAAGAAAAGGACTTCCTTTAAGGCAAAGCCATCTTCGAATCTTGTGAGACTTAACTGTTTTTGGCTTGGAGCTCTGGGTCTGAACAGCGACGCCAGTTTGACCACAATGGGTTGACGCTGGCTGCATTTTTAGGACTGTCAGGCCTGGAGCCAGGACCCCCACACACACCACCACCACCACTTTAGCTCCTTCCCACCCAAGGGCAGCAGCGAGTTGTGTGCGGCATGGAAATGGAAGGAGTGGGTGTGTGCTCGGTAAATCCTAACTAGGCACCTCTGGGAAACCAGCTGGCTGTGGTTAAAAGAGGAAGCCATTCCCCCTGGTGCAGGAGAACGAACTGTGTAATCCTGGGCAGAGGAGGAAGCAGCCTTGCTCTCTCCTCCCTTTGATTTCAGACACTGTGTCTGAGGTAATTATCTCTTCGTCTGCATGCCACCAGCTATTGTAGAAATTTGGGGATTAAGGAAAGTAGAGGGACTGTTTCAGATCTCCCCTGCTCTCCCCACTGGCAGCAGCACCTCTTCATTTCCCTGTGTGCCCTCTGCAGCTTTGAGGGGGCTTATAATGGGTGCTTGCTGGTACTGGCCTCGAAAGGGTTGGAGGAATTTGAAGAGATTTACAGTAGGAAGTGATTGGCCGGTGTTCAGAGGTTTAGAGCAATTTATGGCAAACCTACCTGAAATCTAGGGTGATTTTTTTTTTTAATACATGACCCCCACTGCACCTGGAAGATCAAGCAAGTCAGGTGCTCTACGCATGAGCATTTTGCATATCCTAGCACCCTACAGCCTGTGGGGAGCCATGCAGATGGACGCTTTTACCCTTCGTGTCATTTTAAGAACATATTTGTCCTTTCCAGGAAGAATTAGCAATAATGGCAGGTTCCTTCCTTTAACATCTTCAAAATACTCTCATTCATTATTTTGAGGCCAGAGCATCTTTAGTATGGCATGTTCTCATGCATGTAAATAAAATAGTGTGCTTTCTTTGAATGCATCTGTCACCATGAAGGTAGACTACAGGGGTGGAATTGGAGACAACGCATGGAATTTGTGGAAGAAATGTTTTCCCTTCTTAGACATGCATATTTCTCTGTAAAGCTGTTTTCAGTTAAATGACTGAAGATTTCAAATGATCTCATTGTATTGGAATTGTGTTGCCCTGACAGCAGTTAAAATTCAGTGGGTTGGTAGCTGAGGTTGGTGATTGTTTTCATTGTTCACTGATGTTAATTATCGAGCCTTCTGAAAACAAGTTTTATTAAATGCATTTATTCATTCAACAGGTGTTATTAGGTGCTGACTGAATGTCACTCTCACTCGACAACTCTGTGTGACAAAGTTAATATTTTATTTACACAGACAGGGTAGTACAATATTTAAAAGTAGTTTGGCCTCAGTAATACTAGTGATAACAGGTCAGAAAAGCAACAACAAACTATCTGGTTGCCTTGAAATATGAATTTTAGGAAGATGGCCAAAAAAAAAAAAAAAGGAAAATTCTATCAACTATAATTCATCTATTCAGTATGACCATCATAAACATTTTGAGTGTCACTGGGTGATAGAGATGCCAAAATATCATACTAGTTTCATATGTGTATATATACATATCTACATATACACATACATATATATATATATGTATGTATATATAGTACATATATATGTATATATACATATATATCCACAAACAATTTTAACACCATCAACAAAAGCCTTCATATTCTACTCTCTTAATTTTTTTTTAATACCATGAAGGGCTCAACTGTAAAGAAAACACTTGTTGCTCTTATAGAGAACTTGGGTTTAGTTCCCAGCACCCACTTGGTGGCTCACAACCATCTTTAACTCCTGCTTTGGAGATACTGCACCCTCATGGGCACTGGATACACATGTGGTATATATATATATATACAACAGGCAAAGCACTCACACACGTAAAGAAAATGCCATGAAATATTTCAAACACTTAATAAATACAAAAGGAATATAACAAACACCTACCCACCTGTCATGCGCCTTTAGCTCGTTTTCTTTCCTTTTTAAAATGTATTGCCTTCTTTGTATGTCCATGGGTGTAACACACGCATGCCTGTAAGCATCAGATCCCAAAGACTGGAGTTACACAAGGTTGTGAGCAGCCATGTGTGTGGGTGCCAGGAATTGAACCTGGATTCCCAGGAAGAGCAGCCTGTTCTCTTAAGTACTGAACCATCTTTCCCACTCCTCACATTTTCTTTATAAAAGAAGAGCAGGGTGGGGGTGGGGTGGGGGATGAGGGACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTTAAAAAAAAAATTTAAGAAAAAAAAGGAAGAGTTTTGTGAACGTTTTTCTTTACCAACATCTGATCTTTAAGGATACCATTTTAAATGATGTACTTTCGTTTTTAAGAGTGATGGTATTCTATTATTTAATTTTGAGTCTGTAGTTCTGGTTTGCTTGGCTTTGCTATGTAAATCAAGCTGGCCCAGATCGCAGAGATCTGACTGCCTCCTAAGCACTGGGAGTGAAGATGTGCCTCTGTGCTCACCACTACAGTATTTTAATCCTCTCTCATTGGTCATTTAGTGTAGCTCCAGAAGTTTTGCACTGAGTGCTGCTTTTGAAAGAGCCGACTCCTTTTTTCCCTGTGCTTCACTGTCATTCTCCAGTAACTTTAAGTAAGAATCGCAGCATCAGAGTTTAAATTCAACTTAAGTGTATGTCATTATAGTTTCAAAAGCTCATATTTGCTTTAACAGTGAGTTTGAGAACAACATTTTAATAATTCTTACTAATCCAAGTATTACCACTTAAAACAAAGACAAAAATTCAAATTAAAAAGCCAGTTTGATGAATCAAGAATGATGTCTCCTTGATAAGTTTTTACACTGACATTTTTATGATCGTTCTGAGAATTGAACACTTGAAAATTGGTTATAATGTTATTTTTCACGTGGTGATTATATGTCTCAGTATGATTTCAGCCATGCTTAGCAGCAAACACTTTTATTAATAAGGAATTGATGGACTTGCACCGAGTTCTCCTTTTTGTATTTGCTTTATATGAGACTGAGAGTCCAGCGAGTGATATTTTAAGTGACCGTATGCATTTCTGTTCTTTTCTCGGCTTGCTTGCTTCCTGCTTATGGCACGCGTGAAG
Seq C2 exon
CAGAAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTGCAGCTCGCAGAGTCAGCCTACAGGTTTGGACTGGGTTCTATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112-Slc25a13:NM_015829:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: