HsaINT1041849 @ hg38
Intron Retention
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25 member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr7:96184927-96189378:-
Coord C1 exon
chr7:96189294-96189378
Coord A exon
chr7:96185012-96189293
Coord C2 exon
chr7:96184927-96185011
Length
4282 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCCTGTGCATGCAAAGCAGAAG
3' ss Score
1.43
Exon sequences
Seq C1 exon
ACGTATGACCTTAGCAGACATTGAACGGATTGCTCCTCTGGAAGAGGGAACTCTGCCCTTTAACTTGGCTGAGGCCCAGAGGCAG
Seq A exon
GTGAGCAAAGAGGAGCAAACTTGCATTCTGGGGTTTCCTTAGCAGGATACCCCAACCCTGTTCCACTTGCAGTTGCCTTTGCGGCATTGGTATCTGACTTAACCATTTTTCTGTTTTGCACCAAAACTCTCGATAAATTTTAAAGGCTGTAAAGAGAAATTGCTTAGAAATGGTGTGATAAACAGGTATTTGGCATTTGCTCATTTCTTGCTAAGGTGGAGTGATTTCCTAACTGCACCAGAAGCCTAATGCTCCGAAAACATGAAGGAGGTCTTTTCTCCTTTCTTGAAGTCTCATGTTGAGAGATGTAGCGAAAGAATCCCGTGTTGGTGTCACTGTGCCTGTCGGCAGCTGCACGTTGCTAAATGAAAGCCGTCTTTGCTCTGTGGAGCAGCCCTTCATCAGCGCATCGTCTAACTGCCATGCCTTCCGTTTTTCTGAATATCAAAATGAGATAATTTTGTTTAGTCTGGAGTTACAGTTTAAAGGCTTTCAGACCTATTTTCTCTGTGAAAGGATTCATAAGTTATATGGAAACAATTTTAGGAATGCTAAATTTTATTTTATGGTTAACAGAAACCAATCTCTTGAAGTTGTGGGAGTCAGAAACTTAAGACATGGAACTTTCTCCTTTAACTCTTACCCAGCTTTCTGTAGATCAGGATTAGAGAAGAAAAGCCTTCATAGCATGTGTTAGTAAAATAAATGGTGTTTGTAAAATAAATCCACTCACAGGCGAGTGTCGTTTTTAGAAAAATTTCTCCTTTTAGGCAGAGCCATCTCTGAATCCTGTGAGACTTCGCAGTTTCTGGCATGGAGCTCTGGGTTTGTACAGAGACGCCAGTGTGACCACAATGGGTTGCTGCAGGCTACACTTTTAGGACTGTCAGACCTTGAGCCAGGGCCCCCTTCTTTTAGCTCTTTCCCACCCAAATGCAGCGGTGAGTTTTGTGTGCAGCATGCAAGTCAAAGTAGTGGGTGTGTGCTCAGTAAATTCTAACGAGCACCTCTGGAAAACCAGCTGGCCTTGCTTAAAAGAGGAAGCCGATTTCTCTGAGTGCAGGAGAAATAACTATAATCACGTGTAGAGGTGGAAGCAACACTGCTCTCCCTTCCCTTTGATTTTTAACACTGCTTAGGAGATGATTATCTCTTCGTCTGTATGCCACCAGCTATTGTAGAAATTTGGGGATTAAGAGAAGCAGAGAAGTTTTTTTTAGATCCCTCCTACTCTTCAGCTGGCAGCGGCTTCCCACAATTTTTCCTTTAAGCTCTTTGCAGCTTTTGAGAGTTTATGATGGGTGCTTGTTGATACTGGCCATGAAAGGGTTAGACCAGATTGATGAGATTTATAGCAGGAAATGATTCGCTGCCGCTTAGAGGTTTAGAGCAATTCACAATGGCCTTACCTGGAATAGGCTTTTTACTGCATGAACCCTAGTGGGCCCGACAAATTCAAGCAAGGGAGGTCGTCCACCTGTGGGCACAGCGCTGCCTGTCCAGCACTGTGCAGCACTTGTAGCATTTATCCTGGACAGAGGAGTGAAGGAGCAGAGTTTTGTCTCATTTCAAGAACATGCTACAGTTCTGGCTTTGGAAAAGTTAAATAAAAGTCTAGGATTTCATTTGTCTTTTAGGAGAGGAATTAATGGTGGTGGTAGGTCCCTCCTCCCCCCACCCTCTATAATTTTCAGAGTATTTTCACTCATTATTTTGATGCCAGAACATTTCTAAGTATTGCATATTTATATCCCTGTAAATAAAATATTGCTTCTCTTTTGGATGCATCTGTCAAAATGAAGGTACTATTGATTTCCATCTATATAGGGCTACAGTTGGAAACAACTCATAGAATTTGCAAAAGAAATGTTTTGTATCTTAAAGAGGCATATTTCTATGTAAAGCTATTTTCAGTTAAGTGACTTTGAAGGAGATTCCAAATGATCTCATTGTATTAGAATTGTGTTACATTGACAGCAACTAAAATTCAGTGGGTTGATAGCTGGGGTTGCTGATTATTTTCATTGTTCACTGATTTTAATTATCATGGATTCTGAAAAACAAATTTTATTGAATGTATGTATTCATTCAACAGGTATTTATTAAGCACTGACTATATGTCACCCTCATTTGACAACTCTCTGTGACATAAAATTACTGTTTTATTTATGCAGACAGAGAAGTGCAGCACTCTGAAATGTTCTGGCATCAAAAACACTGTGAGGATAATAGGTCAAAAGAACCAGAAAACAATGACTGACTGACCTGAAGTATGAATTTAGAAAAGATGGACAAAAAAAGAGAAAAAGTAACGATCAACTGTAATACAGCCACCTAGTTTTAGCTACTGTAAATGTTTTGAGTATCTCTGGGTGGTAGGGAGGCAAAATATTAGTATTAATTTTATATGCATATATATGTAAACCTCTTACAAGCATTTTTAATAAAAAGTGACATCATTTTGTATATAGTCTTAAAAATTGTTTTTAAAAAAATTACCAGGAAATAGGTCAAACATTTAAATAGGTACAAAGAATCATATGACAAATACCTATCTACTTACCATGCTCTTTTTAGCCTATGTTTTCTTTTATAATTCCTTGTGAACATTTAATATCAAATATTCTTTTACAGTATCATTTTGAATGATAGGGTTTTGTTTTAAAGTTATTATTTTTAAAGGCTATAGTCCTCCGTTATTGGACATTTAGAATATTTCCCAAATTTTTGTTCTTTTTGTTTAAAGAGCAAAAATTTGGGAAATAATCGAAATTTCCAATAAGTACTACAAATGTTTTTTAAGTGCTACATTCTTGTAGCTTGTTACATGCATGATTATCTTCTATCCTAACTTTTTTCTTTTTGAGACGGAGTTTCACTCTTCTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAGCCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCATGCGCCACCACGTCCGGCTAATTTTTTATTTTTAGAAGAGACGGGGTTTCTCCATGGTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCTATTCTAACTTCAGAGGTTATGTACATTTTAAGGGTTTGGGTGTATATTACTAAACATCTCTCTATTTATGCTTGCTTTAATGGCAAATTTCAGAAGGCTTGTTATCAACTTTTGCCAGGCTGGGTATTGCCACTTAAAACAAAAACAAAAATACATACAAACCAAAAACCTGCCAATTTGATTGATGAAAAATGATGTCTCATTGATGTTTTTATTTGCTTTATTTACTTTATTTTATTTTATTTTTTTGATACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTTCACCTCACGGGTTCACGCCATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACACCCAGCTAATTTTTTTCTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCACCCACCTCGGCCTCCTGAAGTGCTGGGATTACAGGCATGAGCCACCGTACCCGACCTATTTTTATTTTTGAGATAGAGTCTTGCTCTGTTGCCGAGGCTGAAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCCCCTGGGCTCAAGTGATTCTCCCTCCTCAGCCTGAGTAGCTGAGACTACAGGCACATGCCACCATGCTGGTCTAATTTTTGTGTTATATTATAGAGATGGGCTTTCACCATGTTATCCAGGCTGGTCTTGAACTCCTGTGCTCAGGTAATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTCAGTGATGTTTTTAACTGTGCATTTTTTTTAATGAGAATTTGAAAATAGGCTTATAACATCATTTTTGTCAAAGGATGGTTTTGATTATATTGAAATTTGGTTTTAAACATTAATAGCACTAAAATCTTTTTATTAATAAGAACTTATGAAATCCATTCCTACTTTTTTCCTTGACATTTTAGTTGTATCATGGATTTAGAACCCAATGAGTAATGTTTAAAGTTAATGTATGGTCATTTTTGTTTTATCTTCTTTTCTGTCACCTGTTTTCCTGCTCTCTGATTCCTGTGCATGCAAAGCAG
Seq C2 exon
AAGGCCTCAGGTGATTCAGCTCGACCAGTTCTTCTACAAGTTGCAGAGTCGGCCTACAGGTTTGGTCTGGGTTCTGTTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864:ENST00000265631:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains