RnoINT0136830 @ rn6
Intron Retention
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31646683-31650641:-
Coord C1 exon
chr4:31650557-31650641
Coord A exon
chr4:31646771-31650556
Coord C2 exon
chr4:31646683-31646770
Length
3786 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGCTACGGCACACATGAAGCAG
3' ss Score
-2.98
Exon sequences
Seq C1 exon
GCGCATGACCTTAGCAGACATTGAGCGGATTGCCCCTCTAGAGGAAGGAATGTTGCCCTTCAACTTGGCTGAGGCCCAGAGGCAG
Seq A exon
GTGAGTGACTTCTCTCCTGGTGCTTTCCACAGAGATACCCAGGCCCCTAGCACTTCCATTCCACTTCTAGCATCAGTTTCTGACTTAACCATTTTCTAAGTCTGCTCTCCAAATGTAGGCATTTTGAGGAGGCTAAAAGGGAAGTTGTTTAGCAACCTTCTGGTGAACAGATCTGGGCATGTGTTTCTTAGAAAGACAGGGCAGTTGCCCCAACACTCGAAACCCCAACACTCCAAAAACAAGTAGCTCTTTTCTTCTTCACATCTGGTACTGAGGGATGTGGGCGTGGAGCACTGGCTCTTGTGACTGTCCCCAGCAGCATCTGGCATTGCTAAATGAACGATATTGTTGTTCCTCAGTGGGGTACTGTCAGAGCATTGTCTAACAGCCATGCCTTCCGGTTTTCTGAGTATCAAAATGAGATAATTTTGTTTAGTCTGGAGTCATAGTTCAGAGACTTTTAGACCTGTTTTCTCTTGTGAAAGGATTCATAAGCTATGTGGAAACAATGTTAGGAATGCTCGATTTTATTTTATGGTTAACAGAAGCCCATGTGCCGAAGTTGTGGGAGTCAGAAACTTAAGACATGGGACCTCCTCGCTTAACTCCTACTCAGCTCTGTAGCTGGGCTTGAGAGAGCAACGCCTTCATCGCACGGGCTATGCCTACATGGTGCTTGTAAAATAAATCCATGAAGAGACAGAAAGTATTTTTTTTTTTTTTTAAGAAAAAAGACCTCCTTTAAGGCAAAGCCATCTTCGAATCTTGTGAGACTTAACTGTTTTTGGCTTGGAGCTCTGGGTCTGAACAGCGACGCCAGTTTGACCACAATGGGTTGACGCGGGCTGCATTTTTAGGACTGTCAGGCCTGGAGCCAGGATTCCCCCCTCCACACTCCCCCTCTCTTAGCTCCTTCCCACCCAAGGGCAGCAGCAAGTTGTGTGCTGCATGGAAATGGAAGGAGTGTGTGTGTGCTCAGTAAATCCTAACTAGGCACCTCTGGGAAACCAGCTGGCTGTGGTTAAAAGAGGAAGCCGATTCCCCCTGGTGCAGGAGAAAGAACAGTGTAATCCTGGGCAGAGGAGGAAGCGGTCCTGCTCTCCCCTCCCTTTGATTTCAGACGCTGTGTCTGAGATAATTATCTCTTGTGTCTGCGTGCCACCAGCTATTGTAGAAATTTGGGGATTAAGGAAAGTAGAGGGGCTGTTTCAGATCTCCCCTGCCTTCCCCCCTGGCAGTAGCACCTCTTCATTTCCCTGTGTGCCCTTTGCAGCTTTGGAGAGCTTATAATGGGTGCTTGCTGGTACTGGCCTCGAAAGGGTTAGAGGAATTTGATGAGCTTTACAGTAGGAAGTGATTGGCCGACGTTCAGAGGTTTAGAGCAATTCATTGCAACCCTACCTGAAATCTAGGATGATTTTTTTTTTATGCATGAATCCCACTGCACCTGACAGATCAAGCAAGTCAGGTCATCTACCTGTGGGCGGTTTGCATGACCTAACACCCTACAACCTTCCGAGTGTTTGCCCCAGACAGGGGAGTGATGAAGCTGGAATCTTCTTCATCGTGTCACTCTGAGAACCTATTCGTTTTTTCCAGGAAGAATTAGCAGTAATGGCAGAAGTTCCTTCCTTTAGCATCTTGAGAGTACTCTCATTCACTATTTTGATGCCAGAACATTTTTAGTATCGCATGTTCTCATGCATGTAAATAAAATGATAACGCTCTTTCTTTGAATACATCTGTCAGCATGAAGGTAGACTACAGGGGTTGAATTGGAGGCAAGGCATGGAGCTTGTGTAAGAGATGTTTTACCTTCTTAGACATGCGTGCCTCTCCGTAAAGCTCTTTTCAGTTAAATGACTGGAGATTTCAAACGATCTCATTGTATTGGAATTGCCTTGCGCTGACAGCAGTTAAAATTCAGTGGGCTGGTAGCTGGGTTTGGTGATTGTTTTCATTGTTCACTGATGTTAATTATCGCGCCTCTTGAAAACAAATTTTATTGAATGTATGTATTCATTCAACAGGTATTATTAGGTGCTGACTGTATGTCACTCTCTCCTGACAGCTCTGTGGACAAAGTTAGCATTTTATTTCACAGACAAGATAGTACAATATTCTAGAATGGTTTGGCTTCAGTAATACTAACGATGACAGGTCAGAAAAGCAACAGCAAAACAGCTGGTTGCCTTGAAGTAGGAATTTTAGGAAGATAGCTAAAAAATGAGGAAAAACATAATCACCTATAATTTATCTATTTAGTTATGGCCGTCATAAACATTTAGAGTGTCACTAGGCGATAGAGATGCCGAAAATCCATACTAATTTCATGTTGATATATAGATACATATACATATATCCATATATAATTCTAACACCACCAACAAAAGACTTCATATTCTACGCTCTTAAATTTTCTTTTAATACTTTGAAGGGCTCAACCGTTAAAAGCACTTGTTGCTCTTATAGAGAACCTGGGTTTAGTTCCCAGCACCCACATGGTGGCTTCCAACCATCTTTAACTCTTGCTCTGGGGATTCTGCATGCTTGTGGGCACCAGATACACACGTGGTATATATACATGCAACAGGCAAAACACTCGCACACAGAAAGAAAACGCCACGAAATATTATAAACATTTAATAAAGGCAGAAGGAATTTAACAAACCCCTGCACACTTGCCATGGCCTTTTCAGCTAGTTTTCTTTCATCTTTGAAATGTATTGATTTATTTTTATGTCTATGGGTGTAACACACGTAGGCCTGCAGGCATCAGATCCCTAAGACTGGAGTTACAGAGGGTTGCGAGCAGCCATGCGGGTGCTGGGAATTGAACCTGGATTCCCAGGAAGATCAGCCTGTTCTCTTAACTAATGAACCACCTCTCCCACTCCTTACCTTTTCTTTATGAAAGAAGAGTTTTGTGAACATTTTTCTTTACCAACATCTGATCTTCTTTGAGGACACCATTTTAAATGATGTGCTTTTGCTTTAAAAGTGATAGCATTTTATTTATTTATTATGTAATTTTGAGACAGGATATACCCATGTAGTCCTGTTTGCTTTGCTTTGCTACGTGGATCAGTCTGGTCCAGATCTCACAGAGATCTGCCTCTGCCCCCTAAGCACTGGGAGTAAAGGTGTGTGCCTCCGCGCTCACCAATACTGCATTTCAAGCCTCTCTTCTTGGCCATTTATTGTAGCTCCAGAATATTTGCGCTGGGTGTTGCTTTTCAAAGAGCTGACACCCTTTCCCCTGTCTTTCACTGTTATTCTCGAGTAACTTTAAGTGAGAATCGCAGCATCGGAGATTAAATTCAACTTAAGTGTTTAGGTCTATGTTATTTAGAGTTTCAAAAGCTCATATTTGGTTTGACGGCGAGATTGAGAATAGCATTTTAATAATCCTTACTAACCCGAGTATTACCATTTAAAACAAAAGCAAAACTCAAACAAAAGTCTCAGCCAGTTTGCGGAATCAAAGAACAATGTCTCCTCAGTGTTTTCCACACTGACATTTTTGTGATCACCGTGAGAATTGAGCGTTTGAAAATTGGCTATGACGTCATTTCTTACGTGGTAATTTTATGTTCTGATATTCTTTCAGTCATGCTTAGCAGCAAACACTTTTATTTAGTAAGAACTTGATGGCCTCGAACGCAGTTCTCCTTTCTGTATTTGAGGTGTACTAGATTTGGAGTCCGCTGAGTGATATTTTAAGTGACCACATGCATTTCTGCTCTTTCCTCGACTTGCTTGCTCCCTGCTACGGCACACATGAAG
Seq C2 exon
CAGAAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTACAGCTGGCAGAGTCGGCCTACAGGTTTGGACTGGGTTCTATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957:ENSRNOT00000013817:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]