BtaINT0134554 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003773 | SLC25A13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr4:13430636-13434161:-
Coord C1 exon
chr4:13434077-13434161
Coord A exon
chr4:13430724-13434076
Coord C2 exon
chr4:13430636-13430723
Length
3353 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CAATTCCTGTGTACGCAAAGAAG
3' ss Score
-2.05
Exon sequences
Seq C1 exon
ACGCATGACCTTGGCCGACATCGAACGGATTGCTCCTCTGGAGGAGGGGACTCTGCCCTTCAACTTGGCTGAAGCCCAGAGGCAG
Seq A exon
GTGGGCAGAAGGGTCACACATGCTTCCTGGTGTTGCCTTGATAAGGCCCCACAGCCCCTTTTCACTTGCAGTTGCCTTTTCAGCACTGGTTCCTGACCTACTGTTTCTCTGTTTTGCAACAAAAAAGAAAACCAGACCATTTCAAAAGGCTGGAAAGAGTACTTACTTAGAAATGTTCTAAGTAGCAGATAACTGGCGATTGCTCTCTTCTGCAGAAGATGGGGTGATTTCTTAGCTGCATGGGAAGCCTCACCCTCCCCAAAGAGGAGGAAGATCTTTCCTCCTTCCCTCAGCCTCAGGCTGGCAGAGCTGGGGCCACAGACCGCTTTGGGTGTCACGTCCCAGCATCATGTCGAGAGACGAGGGCCGGCTCTGCCTCGCAGAGAGGAGCTCCATCAGGGCACCGCCTGACTGCCATGCCTGCCGTTTTTCTGAATATCAAAATGAGATAATTTTGTTTAGTCTGGAGTCATAGTTTGAAGGCTTTTAGACCTATTTTCTTTGTGAAAGGATTCATAAGTTATGTGGAAACAATTTGAGGAATGCTAAATTTTATTTTATGGTTAACAGAAACCAATCTCTTGAAGTTGTAGGACTCAGAAACCTAAGACTTGGGACCTCCTTACGCTTAACTCTTGCTCGGCTTTCTATAGATCGGGATTAGAGAATAAAAGCCTTCAGAGCGTCTGTTGTGCTTCCACGATGTTTGTAAAATAAATCCCCTCACAGACGAGCGTCGTCGTTTCAGAAAAATACCTCCTTTAAGGCAAAGCCATCTCTGAATCCTGTGAGACTTAACAGTTTTTGGCTGGGAGCTCCGGGTCTGTACTGAGACGCCAGTTTGACCACAATGGGTTGATGCGGGCTGCATTTTTAGGACGGGCAGGCCTGGAGCCAGGACGCCCTCCTTTCAGCTCTTTCCCACCCGATGGCAGCGGCGGGGTCTGTGTGCAGCGTGGTGGGCGTGCGCTCAGCAAACCCTCGCTAGGCACCTCTGGAAAACCAGCTGGTCGCTGTTAAAAGAGGAAGCCGATTTCCCCGAGTGCAAGAGAGAGGAATGTGGAATCACATGGAGAGGGGGACACAGCCCCGCTCTCCCCTCCCTATGATTTTTAAACACCACTTACCACTTGATTATCTCTTTGCCTCTGTGCTGCTAGCTCCTGTAGAAATTGGGGGATTAAGAAAAAGCAGAGAATTACAAAAAAAGATTCCTTCTGTTCTCCTGTGACAGTGGTACCCCACAATTTCTCCTCTATGCCCTCTGCAGCTTTAGCAAGTTTCTGATGGTGGGTGCTTATTGATCCTGTCCATGAAAGGGTTCGATGAGACTGATGAGGTTTACAGCAGGAAATGATTGGCTGCTGCTTGGAAGTTCAGAGCAATTCACTGGGGCCTTGCCTGGAATATTCTTTACTTATGTGAACCCTGGCGGGCCTGACAACATTGGCAGACGCAAGCAACAGAGGTCACCCGCCTGCCAGGCTAGGGGGCTAACTCTTCTCCGCGAGAGAGGAGTGTGGGAAGAGGAATCTTTCTAGTATTCGTTTTGTGAGGATGGTACATGTCTAGCTTCAGAAAAGTTATCTGAAAGTCTGGGGTTTTGTCTGTCTTTAGATGAATTAGTGTTAGTGGTAGGTATCAACCCATTGTTTTCGAAGTATTTTCACTCACTGTTTTGATGCCAGAACCTTTTTTCATATTGCCAGCTTATATCTTGTGCACATAAAGCAGTGCCTTTCTTACCGGCGCATCTGTCAAAATGAAGTTACTGTGCATAACAGGTATAGATGGAAGTCATCCATCTTTATGGGGATACCCTTGGAAGCACCCATGGCATTTGCAGAAGAAATGTTTTACTTTCTTAAAAATGCATATTGCTGCATAAAGCTATTTTCAGTTCATTTTGAAGGAGATTCCAAATTATCTCATTGTATTAGACTTGTGCTCCACTAACAGCAGCTAAAATTCAGTGGGTTGATAGTTGGGGTGGGTAATTATTTTCATTGTTCACCAATCTTAATTATCATGGCTTATGAAAAAACAAATTTTATTGAATGTATTTATTCACTCAACAGGTATTTATTAAGCACTAACTATATGCCACCCTCATGTGACAGCTCTGTGTGACATAAAATTACTGTTTTATTTATGTAGACAGAGGCGTGAAATACTCTAAAACTTTCTGACATCAAAAACACCATAAGAATAGTAGGTCAAAAGAACACTAATAATAATACAATAACTGACTGGCCCAAAGTATGAATTTAGAAGAGATGGACAAAAAAGAGAAAATATCAAATCACCTGTAATATAACCACTTAGTAGTAGCCACTATAAATAATTGAGTATCTCTGGGTGATGTGGCAGCTGGCACGCTAGTGTTATTTTCATATGCATATATACACCAAAATAATTTTAATGAAAAGCACAGCATATTCACACACAGTCTTCAACACTGGTTTTAAAAGATAATCATGAAACATTTCAAGCAGTTTAAAAGGTAGACAGAAATAGATAATAAATACCTGTCTACGCACCATATTGGTTTTTAGCCTGCTTTTTCTTTATAATCCTGGATGCACACTTTTTCTGAGCATTGAGTATTTTTCACAGTATTGTTTTTTAATGGCATGCAGTTTTGTTTTAGAGCTATAGCATTATTTTTAACCAGTCCTCTGTTACTGGACCTTTGGGTATTCTCAGAGGTTTTGCTCTTAAAATGGTACTGCTTTTTAAATTTTTTTTTTTTAAAACAGTACTGCTTTTTATTATTATTGTAGCTTGATCCTTGTTTATATAGACGATTATTTTCTAGCCTAACTTTTTAGAAGTAGAATTGCAGGGTCAATTTAAGCACTTGTACATTTTAAGCATTGAGTGTGTATTGCCAAATTTCCCTTCAGTGTATACTTGATTAAATGGCAGATTTGAGAAGCCCTGTTTTTTGTCATCTTCTGCCAGGTTGGGCATTGCCATTAAAAACAGACAAAACTCCCCAAACCTACCAGTTTGACAATTTGTTGAAGAATGATGTCTCATTAATGGTTTTAAATTTATTTCTCTTTGATCACTAATGCGGATAGAACATTTGAAGATGAGTTCATATTCATAACATTTTGGGGGACACAGTAGTGTCTTTCATTTAAACTTGATTTTAAAAATTGACGGCAATAATTACTTTGTATTGAATTTACAAAAATCTAACCATACCTTCTTCCTCTTTGACATTTTAGCCGTATCGTGAGTTTAAGAATGCAGTTGTAATTTAAAAATAAAATAACATGCTCATTTTTTTTTTATTTCCTTTCCGTCTCCTGTCTTCCCACTCTGCAATTCCTGTGTACGCAAAG
Seq C2 exon
AAGAAGGCATCAGTTGATTCATCTCGACCAATTCTCCTGCAGATTGCAGAGTCAGCCTACAGGTTTGGTCTCGGTTCTATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003773:ENSBTAT00000004912:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]