MmuINT0146135 @ mm9
Intron Retention
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32837241-32837576:-
Coord C1 exon
chr2:32837478-32837576
Coord A exon
chr2:32837404-32837477
Coord C2 exon
chr2:32837241-32837403
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCCCGCCTTGTACCCGTAGGAC
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCTCGCCCGAGCGGCGACAGTTCGCGGGTCAGGTCCTGCTGACATGTCTCCCGAGGACCCCCAGGAGACGCAGCCGCTATTGCGGCCACCGGAAGCCAG
Seq A exon
GTGAGGACTCCCAGGGGCCGCGGTCACTCTCTCACGCCCGGCGACACCGCTCACGCCCCGCCTTGTACCCGTAG
Seq C2 exon
GACTCCCCGCGGCCGCCGGGTCTTCCTCGCTTCCTTCGCCGCCGCTCTGGGACCCCTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCGGCCCTGCGCCTCGGAGACAATGCGGCCTCCTGGTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791-Slc2a8:NM_019488:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(16.5=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACGCAGCCGCTATTG
R:
CATTGTCTCCGAGGCGCAG
Band lengths:
182-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: