BtaINT0135169 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006957 | SLC2A8
Description
Bos taurus solute carrier family 2 (facilitated glucose transporter), member 8 (SLC2A8), mRNA. [Source:RefSeq mRNA;Acc:NM_201528]
Coordinates
chr11:98161639-98162047:+
Coord C1 exon
chr11:98161639-98161789
Coord A exon
chr11:98161790-98161884
Coord C2 exon
chr11:98161885-98162047
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACCGCCCCTGTCTCCGCAGCGC
3' ss Score
11.16
Exon sequences
Seq C1 exon
GGTTGCCCTGGCTGAAACGCCGGTGCTGGCCGCACTCGCGGGACCCGTGGCAGTTCAAGGCGTCAGAGCCCTAAAAGCAAGCGTTGATCGCGGACATGACGCCTGAGGACCAAGAGGAGACCCAGCCGCTCCTACGGCCGCCCGGCGGCAG
Seq A exon
GTGAGCGGTAGGGGGAACCCGGGTCCGCTGGCGCGGCCTCACTCCATCCGCTGCGCCCAGGCCTTGCGGCTCACCGACCGCCCCTGTCTCCGCAG
Seq C2 exon
CGCTCCCCGCGGCCGCCGCGTCTTCCTCGCTGCCTTCGCCGCTGCCCTGGGACCGCTCAGCTTCGGCTTCGCCCTCGGCTACAGCTCCCCGGCCATCCCGAGCCTGAGGCGCGCCGCGCCCCCGGCCCCGCACCTCGACGAAGACGCAGCCTCCTGGTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006957:ENSBTAT00000009144:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(9.8=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTAAAAGCAAGCGTTGA
R:
GATGGCCGGGGAGCTGTA
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development