MmuINT0146135 @ mm10
Intron Retention
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32981721-32982082:-
Coord C1 exon
chr2:32981958-32982082
Coord A exon
chr2:32981884-32981957
Coord C2 exon
chr2:32981721-32981883
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCCCGCCTTGTACCCGTAGGAC
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTGGTCACTCCTGCAGCGGAGGCCGCGCTCGCCCGAGCGGCGACAGTTCGCGGGTCAGGTCCTGCTGACATGTCTCCCGAGGACCCCCAGGAGACGCAGCCGCTATTGCGGCCACCGGAAGCCAG
Seq A exon
GTGAGGACTCCCAGGGGCCGCGGTCACTCTCTCACGCCCGGCGACACCGCTCACGCCCCGCCTTGTACCCGTAG
Seq C2 exon
GACTCCCCGCGGCCGCCGGGTCTTCCTCGCTTCCTTCGCCGCCGCTCTGGGACCCCTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCGGCCCTGCGCCTCGGAGACAATGCGGCCTCCTGGTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791:ENSMUST00000028129:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(16.5=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACGCAGCCGCTATTG
R:
CATTGTCTCCGAGGCGCAG
Band lengths:
182-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types