RnoINT0137477 @ rn6
Intron Retention
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12029556-12029877:-
Coord C1 exon
chr3:12029793-12029877
Coord A exon
chr3:12029719-12029792
Coord C2 exon
chr3:12029556-12029718
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
GCACGGCCTTGTACCCGCAGGGC
3' ss Score
9.4
Exon sequences
Seq C1 exon
CGACAGTTCGCGGGTCAGACCCTGTTGACATGTCGCCCGAGGACCCCCAGGAAACACAGCCGCTGTTGCGGTCGCCGGGCGCCAG
Seq A exon
GTGCGGACTCCCGGGGGCCGCGACCTCTCTCTCACGCCCGGCGACGCCGCTCACGCACGGCCTTGTACCCGCAG
Seq C2 exon
GGCTCCCGGCGGCCGCCGGGTCTTCCTTGCCACCTTCGCCGCCGCCCTGGGCCCGCTCAGCTTCGGCTTCGCGCTTGGCTACAGCTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCTGCCCTACGCCTCGGAGACACTGCGGCCTCCTGGTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274:ENSRNOT00000022327:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(9.8=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAACACAGCCGCTGTTG
R:
CAGTGTCTCCGAGGCGTAGG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]