HsaINT0152364 @ hg19
Intron Retention
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:HGNC Symbol;Acc:13812]
Coordinates
chr9:130159465-130159817:+
Coord C1 exon
chr9:130159465-130159565
Coord A exon
chr9:130159566-130159654
Coord C2 exon
chr9:130159655-130159817
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTCGGCCCTGTCCCCCCAGCGC
3' ss Score
10.07
Exon sequences
Seq C1 exon
GGCGGTTCAGGCGCCAGAGCTGGCCGATCGGCGTTGGCCGCCGACATGACGCCCGAGGACCCAGAGGAAACCCAGCCGCTTCTGGGGCCTCCTGGCGGCAG
Seq A exon
GTGAGCTCCGGGGAACCCGGGCCCGGATGCGGCCTCGCCCTCCCGCCCCTCCGCGTCCGCTCCGCTCACCCTCGGCCCTGTCCCCCCAG
Seq C2 exon
CGCGCCCCGCGGCCGCCGCGTCTTCCTCGCCGCCTTCGCCGCTGCCCTGGGCCCACTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCGGCCATCCCTAGCCTGCAGCGCGCCGCGCCCCCGGCCCCGCGCCTGGACGACGCCGCCGCCTCCTGGTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-SLC2A8:NM_014580:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(13.3=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGGCGCCAGAGCTG
R:
CTGTAGCCGAGCGCGAAG
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)