MmuINT0151680 @ mm10
Intron Retention
Gene
ENSMUSG00000026532 | Spta1
Description
spectrin alpha, erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98385]
Coordinates
chr1:174237785-174240413:+
Coord C1 exon
chr1:174237785-174237994
Coord A exon
chr1:174237995-174240116
Coord C2 exon
chr1:174240117-174240413
Length
2122 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
GGTGTCTATTTTTTCTGCAGGCT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GACACACTGGATGCCAGTCTTCAGAGCTTCCAGCAAGAAAGGCTTTCTGAAATCGCTGAGCTGAAGGACCAGCTTGTGGCTGGTGAGCACAGCCAAGCCAAAGCCATTGAGGAGCAGCATGCAGCCTTGCTGAGGCACTGGGAACAACTGCTGGAGGCATCTAGAGTTCACAGGCAGAAACTGCTGGAAAAGCAGCTGCCTCTACAGAAG
Seq A exon
GTCAGGAAGGAGGGAACGGAAAGAGGGGAGGGACAGATTATCATAAAAGCACATCTCACTGAAATATGTTAGGTACCCAAAACTATTTGGTTATTAGCTGGAGAATCCAAACACAGTAACTAGAAAATACATTTGGAAGTTTTATAAACACCTTTAGTACAGAAAAGAAGCAACGAATCATTCTTTTTTAAATTGATTTTTTTTTAAGATTTATTTACTTTTATGTATGTGAGTGTTCTTTCTGCGTGTACACCTGCATGCCAGAAGAGGGCATCAGAATTCATTATAGATGGTTGTGAGCCAACATGTGGTTGCTGAGAACTCAGGAGCTCTGGAAGAGCTTCTGCAACTCTTAACTTTGGAGCTGTCTCTTCAGCTAACATAATATTCTTATGGGCAAAACGGACTTCATAAAACATGCTCCCCGTGTATCTCCTTTCCTGGGAAGGAATCTTCAAGTCTGTTACTTATTGCTAAACCTATGTGTCTCCTTTAATCAAATATTTTCATCCTCTTCTCCTTTTCCAATTCTCACTATTAAGTAAAATAATAGATTTGGAAATGCAGTAGGCCATGTAGATTTAATGTATTCTTTCCAGTGTTAACTTCTGAAGCATGTTAAGTGGCAACCATACAGTATCAATAGTAAAAGGAAGCCAAGCTGAGTGTGGCAGGGCTTACTTGAAACCCCAGACTTCTGACTCAGGGTGAAACGAAAGCATAAAGGGCTCTAGGCCAGAGAGTTTAGCATTAGCAAAATTCTAAGAAATTAAAGACTGGTAGTGTAGATCTGTGTGTACTTCAGTGGAAGTGGAAGTGAACGTGCCTAGAATGCAAAAGACTCTGGCTCTGACCTTCAGCACCAATAGAAAAATTGATTCAGAAGAGTCAGTATTGTCATTACCTCCAGATCAGGGGAACAATTGTACTGGACAATAATTTAAGGCAGAGAGTTAGAGAGGCACACAATGAGTCGCAACTCTTAGTTAATTCCTACTCTACCGAAGAATGTGGGCACAAGATAAATAAGTCTTAAATGAAAAAGTGAAGCAATTAGATTGACATATTTATTCTACACAGAAAGTTACCTAGCACTCTTATTCTTCTTTCTTTAGTTTTAATTAGCAAAACGTTTATTTTAAACTTCTATTTATAAATATCAACTAATCTATAACACTTTTAATATAGCATGAAATGGTCTATAGATTGTGTTCCCATCTTGTTCATTTTCTTTGGGTTGATTTAAAAAAAAAAACTCATTCTCACAATTTCTCAGAAAAATCATGTTGACAATTCACTCAGTTGAGTCAAAAGAATACAGCGCACTTTTGATCTGGAACCAGTCTGTCATTTACTGTTTGGATCAGCCCATGATTTCTCTGTCCTCTAGTCATGTCAGTTCAGAGTCCTTGGAGCGTGTGAGTGGCTGTGGACAACAGTATAGAAGCAGGTGTTTCATGCACAGACTGTAGGTCAGTGTGTAGGTTTAATGAGTTAGGCATCAGATGAGATCACAAGAAAGGTTTAGAAAGAAGGTGGGAAGGTAACTTGGTGTAGTCAATGAATTATGAGGGTATGCCGTCTACAAACGTTGCAGGAAAGAAAGGGAGACAGTATAAAGGATAGAACATAGTTGCTTGGTTTTTTTTTTTTTAATTTCCCAAATATTCATTTAGCACTTGTGTCTAAGTGTTTCCTGTGCCATGTAGAACTTCAGTACAAACTTCAGAATAAGAAATAATATGCTGGGTGGTGGTGGCGCATGCCTTTAATCCCAGCACTTAGGAAGCTGGGATTAAAGCTGTGTAACTGAAAATTACCCTCACCACCCTTAGAATCATGGAGGTAAAAATAACGGTTTAAGCCAGTCCCTCTCTTCATCTTTAAATGGTGGAAAGCTTGAGGAATTTCACACAATTAAAAAAAAAAAAAAAAAACCTAAACCCTGGCAGTTCCTCTAATACAAACTCATTCCACCCCATCACAGGGTCACTGCTAATTTTAGTCTCATTGGTTGAGATTGCTACTCGGCAAATATTTGAAGACACTATTTTTATCCTCAATATTCTCTTCTCCTAAAGGACTTTATCAGAAGCAATGAGGGTGTCTATTTTTTCTGCAG
Seq C2 exon
GCTGAGGAGCTATTCATGGAATTTGCACACAAAGCTTCAGCCTTCAACAACTGGTGTGAGAACGCGGAAGAGGACTTGTCAGAACCTGTGCATTGTGTCTCTCTAAATGAGATCCGGCAGCTGCAGAAGGAACATGAAGCCTTCTTGGCCTCTCTGGCTGGGGCTCAAGAGGATTTCAACTATTTGTTGGAGCTAGACAAGCAAATTAAAGCCTTAAATGTCCCCTCCAGTCCTTATACCTGGTTAACAGTGGATGTGCTGGGCAGAATCTGGAACCACCTGCCAGACATCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026532:ENSMUST00000027817:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(58.5=88.6)
A:
NA
C2:
PF0043516=Spectrin=PU(91.4=97.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types