MmuINT0151739 @ mm10
Intron Retention
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:30027631-30029674:+
Coord C1 exon
chr2:30027631-30027648
Coord A exon
chr2:30027649-30029619
Coord C2 exon
chr2:30029620-30029674
Length
1971 bp
Sequences
Splice sites
5' ss Seq
CGGGTTAAT
5' ss Score
-0.89
3' ss Seq
TGTGCCTCTGTTGTGTTTAGGTC
3' ss Score
11.32
Exon sequences
Seq C1 exon
AACGTATCTCCTCGACGG
Seq A exon
GTTAATATTGCCTTCTTTTCCGGGCTCCTGGTGTGGTGGTGTCTTGTGTGCTTGTCCCTTTGTCCCTTGTCCCCAGTGGCCTGGCTTGCAAAAGATCCCAGGATGGGCCTCCTGTCCACCTTGTCCATTCCCATTGTCCCTGCTAGAAGAACCCATAGTGTTGGGGGGTAGGGGGTGTCACTTCCCCTCTTTCAAGGTAGGGACTGTAGCTGTGCTAGGAAGCCAGAGTCAAGTCTGAGGACCCTGTCCATGCCTGGTCACCAGAACTGGATTGCCTTTCCCTCTTTGCCTGTTTTCCCACGATGACAAAAAATGTACATTAAGCTCCAGAGGTCAGTGGGCATATGAAGTTGGATGGCTATCCTAGGAGCTTAGACTGAGGACAAGGTCCAGTTGAGGGGAAGTTCTGCAGCCCTCTTAGTTAGGACTAAGGTAGTCCTGCCTTCCCCTGGGGGAGGGTAGCCAGAATTGTTTACCCTAGAAAAAGGCAAATGCCCAGCATTACAAGGTTATAGAGACAGGGCTTGGAGGAGCCTCAGGAGGAGCAGGGCTGTCTCCCAGTCCCAGTAGGAGCCTGTCCATAAGCCATCCCCTATCCACTCATGCTACTAACTAGTCCAGACGAAGAGGCTTAACTAGAGCTTATGAGGTCTCGGGGGAAACTGAGGCATGTGAAGGAGTAGTGACCACAGAAATCTGCCCAAACCATTGAGACTGTAGGCTTTGCAAGGCGGGAAGGACTGCAGCATCTGGCCTGCCTACCACAGGCTTCCCCCACCCTATGCTGTCTGCTGCTCTTGCTCTTGTTTCTGTGCAGTGCCATGCTTCCTCACCTGTGGCTCCTCCCAAGCCTTGTCCCACCTGGCCCAGCACCCCTTGAGCTGCCCCTGGTTCCTACCCAGTGCCAGGCTGGCATCTACGGCACATGTCTGTCTCGATATGCTCTTGCCCCGCCTCCCTTTGGTGTATTCATTTGGTTTCTTCTCTTTGAATAGCATAGCATATCGTCGGGTCATTCGTGTCTGTCAGTATGAAGTTGGGGATGATCTGTCTGGAAGGTTCTTCTCCTCTTATTCTCTTCTTCCCTCACTGTGATTTTACCAATGCACTCTGGACTCCCAGGCGGCTCTGCTTTCTAACCCACACCCTAGCCACTTGGGAGGAGGGTCTGTCCCCCTCTGCTGCACTTGCCCTGCCTCCTGCCCCAGTCCCTGGGCTCCCTTTTCCTGGGGGACGGGGTGTGCCTGTGAGTCTTAACTACTACTGGGGTCGGAGGAAGCCTCATGCCTTGCCTTGCTAAAGCACTTTGAACTTGGGGAGATTTTAGAGCTCTTTCTGACGTACTCGAGTCACAAGGGTAGGTTTGGGTAGGCATGGGTGCAGAAGAGACCGGGCTGTGTGCACTGTGTGAACTTGTCCCTGCACGTGACCCATGACCCTGCTCGTTTGTTGTCTTCGTTCACTGGGAACTTCTTTGTACTCACACATCTTGGAGCAAGCTTCCCCCAAGGCCACCTGGCTCCTCAGAAGATGGCCTTCAAAGGGAAGTTCTACCATAGCTGTCCCCAGCTGGAATCAGCTGGCCGGCACACCCACTTAGCGATGTTATTGGCCCTGGTGTCTCTTCCCCTCAGTAGCCTAAGGGAACTAAAGTAGAGTTAAGGGGACTTAGAGGCCCAAGGGCTCCTATCTGTTGGGTTCTTGGCCTCCTGTGGCTGCAAAAAAGGGGGCTAGTCAGGCCTGAAGCTGCTTTGTTCTTATGGGAACAAATTCAGTGATCTTTAAGAGCTGAGAAGCCCTGGCCTTCTCTTTCTTGGGCCTGTTAGGAGGGGTGGCCAGCAACAGATAGGCCATTTCCTCAATGAAAAGAATTTCAGGATGTGGGCACTTTTTACCAGGACGAAGAGTTAAATATTGGCACTGGTCTCCAGAAATGAACTCCCCTGCTTACTGTGCCTCTGTTGTGTTTAG
Seq C2 exon
GTCCTGCATGGTGGAAGAGTCGGGAACTCTGGAATCTCAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738:ENSMUST00000113717:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.513
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(5.7=100)
A:
NA
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types