GgaINT0124394 @ galGal4
Intron Retention
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5179588-5182731:+
Coord C1 exon
chr17:5179588-5179605
Coord A exon
chr17:5179606-5182676
Coord C2 exon
chr17:5182677-5182731
Length
3071 bp
Sequences
Splice sites
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
3' ss Seq
CACTGTAATTCTGTACGTAGGTC
3' ss Score
7.27
Exon sequences
Seq C1 exon
GACTTACCTGCTAGATGG
Seq A exon
GTTAGTATTGAATTTTATATCTTTCAAAATACGGTGATGTGTTCTGCTCTGTCTGTGTGATTTCTTCCGTCACTGTGTTGCTTGTGAAAGCCACACCAAAACCCCTTTTATTTGAAAAGAGCAATCTAGCTGAGGTGCGCAGGAAACAAGATTTTGAAGTGGATTACAAATAAACCAATAAAAACCATACCTATTTTCTAGTCAAAAGCAGAGGAAGTTATGAATGGGAAGCCACTGGCATCCCATGGCAGCGCTGACTTCTGTTCACAGAATGAGGTTGGAGGGGACCTTGAGGACCCCCCCCTGCCATTGGCTGGGCTGCCAGCTGCCAGGTCAGGTCCTGGATCAGATTGCTCTTCCTTTGAGTGCTCACACAAGGAAAGGCTCTTACTCTGAGATGTGGGAGAGTATAGAACGACCATCTTCACCTGGCTTTTAGAACAGTTTTCCAATAGTCAGAGATATGTTTAGCGGAATGGATTTCCTATTGTAACTGTTCTCTGAATGATTAAAGCCCCAAAGTATTGACCATTTTGTTCTGGGAGGAGGAAGACGTGTTCCTATGAAGAGGCTTTGCTGAAATTACGTGTCTTTAAGACTTCATAATACACAGATGTGAACTTTTTGATCTGCTTATTGGCCATACTGTGGAAGAGCTGCTTACCCTGCCCAGATTTCAGTCTTGATGGTAGAAGAGAAAACAGTCCAACAGGAACACAGAGACCTGCTCAGGTTGGCTGGCAGCTGCATCCCGTAATGAGGCTGCTGGTTGGTGATGTGTCAGGAAGTGGAAAGGAAACAATGCAATCTTTACATGTCTTCAGGCTGCCAAAAGCTCCCAGAGCGTGTCTGCCCATTTACATCTCTTCAGTATTATAAAAAAACTGCAACACAATGGAAGCTTTGTAACAAAACGTAGTGCAAAATGTTAACAAACACGGCATGGGCCTGACACAGAGGCTAATGGCACAGAGGCTGTTGGCCCCGTGCAAAGGGCTGGGGAGGAGGCAGGGGCCTTTCTTGCAAAGATAGATGGCTTTTCATAATAAAAGGGTGGAATTCTTCACAGATAACTGCCGCTTATGTGCTCTGTAATGACCACAGTGTCTCTTCTGCTGTTTCTGCCAGATAAAAAGCAGTTTGCCCCGTTTTTGCTGAACAGTTTAATGGAACCGAGCAGATTTTCCTGGAACGGATGCTGAATTCTCTGCTCCTTTGTAAATCGGTGTAGTAGACGAGTTCTTGTATCCAAGAACGAGCTGACAGAAAGGGGCCATTTACTAAAAGCCACCGGGGCAGAGCTGGAGATCACCACGCCAAGAGCTTTTGTTGAGCAAATGACCAGAAGGCCGCTGGTCTGCAGGGCGGTCGGTCCTTAATTCTGTCTGAATAGGTTACAACCACAGACTGAGCCCAGAGAGCCCTCGGCTGCGCTTGGCCTGCCTTGGCAAGAGGGAGAGCAGAGCTCCAGAGAGCTTACAGGGCAGCAGAGTGGTCCTGCAGTGCGCGTTGGTGCGGCGATGGCTGTGCGTGGGAGAGAGGAGCAAAGCAGAGCGTGCGGTTGGGAAGGACGCCTTTGTAGGACCTGTAGATGAGCTCACTGCAGAGTGCATTTTGTGTCCTGGCGTTTCTCCTTTTCGTGTGATTCACGCAAAAATAACCAGTTAGTTTCCCACGTGTGCAACCAGCATCTGGATTTGTTTGTTCTAAGTAATGGCTTCTGTTTGCTGCAAGGTGGCGATGCTGCTTGGAGTGCGGCCGCGCTGCAGTGCCGTGTTTGGGTGTGTTCTGTCCGCTGTGCTTCCTCCTTTCTTGGAATTCACCTGGTTTCTTTTCTTCGATTAGCATAGCCTATCGTCGTGTCATTCGTGTCTATCAGTATGAAGTTGGGGATGATCTATCTGGAAGGTTTTTTTTCCTCTTTATTTTCTTACCTCACTTTGGTTTTCAAATGCACTCTTTAATTCCAAGGCTCGCTTTCCTTCCAACTAACTGTCACGGCTTAGAGATGCTTGGAGGTGTGTTCCCTGCGGAGTGTCCCTCCCGTGGTTGGCTCCCAGCTTCCTGCTCAGGGCTCTGGAGGTGCACTGAGTCTGGCCTTAACCCTGCGATGGGAAACACCCACATGTTCAGGGTGTTTCCGTGGCTACAGAGCGATCCAGCATTGCATTCCCCTCCTCAAAAGCATGTAGGATAGACTTAAAGGGGCTGAAAAGCTGCAGTTACTGACAGGACCCTCAGTACCGGTGAGAAGCATGGCACACCCAGCTGGGCTGTCCACACACAGGTCGGTCAGCGTGAGCTCTCACCGTCAGTGGGAGGATGGAGGTCCCTCAGTGCTGCGGCTTGAGGGCTGCTTAGGTTTCTGGGGGGGGCAGCAACCAGAGACATTCCTTAGCTGGTCCCTACAGAGTGATGCTGGAGACATCCCTGCAGTGGGGATCCTGGTGTGTGAGGGTGGGGGCTGCATGGAGCTGGGACTGAACAGAGCAGTGCTGCCTCAGTGCCTGCGGGTGCTGGGAGGGGTGGGACAGGAAGGCACCTCTCCATCAGCCTACGTAGGGGAGCTCCAGGATTTTTTTGCAGTGATTGTGCTGTGCTAAGATTACTTTCCAACCAAACCAGCAGTTCTCAAGAGGTCTCTTCTCCCTGTTTTATGCCCCATAACACACCTCTGTAGAGTTCCAATGCAGCCCATCTCAGTGAACCCCCCATGGTTGGTGTGTGTGTGTGTGCTGGGCACGGCGGAGCGGGGTGGGACTGCACTGAGTTCCTAATTTCATGAGACCCAACAAAGCGGGTGCTGTGGATCTGGCATGAAGTGTGACTGCTGATCGCATTGCCTTGCAAATGGGGCTAGAAATTAACCGCATAAAGAAATGAGAATTACACAAGTTGTAATGTGTCTGCCTGAAACAGTGAGTCAGAATAAACGAAACACAAACCCAGCATTGGAATACTTGCAGAACAATACTGCTGTAAGGATTTTTAAGGAAGGACTGTTAATTTCAAGCCCCACCTGCCATCTTTTATGGGAGAAGTACTGTGCCTCACTGTAATTCTGTACGTAG
Seq C2 exon
GTCCTGCATGGTGGAGGAGTCGGGAACACTGGAATCCCAGCTGGAAGCTACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719:ENSGALT00000039770:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.526
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(20.7=100)
A:
NA
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]