GgaEX0006464 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5178648-5182731:+
Coord C1 exon
chr17:5178648-5178760
Coord A exon
chr17:5179588-5179605
Coord C2 exon
chr17:5182677-5182731
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGGATCTTCACATTCCACAGGAC
3' ss Score
7.87
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GAGCGTGAATTGGAGTTGCAGAAGGAGCAGCGGAGGCAGGAAGAAAATGACAAGTTGCGCCAGGAGTTTGCTCAGCATGCTAATGCCTTCCACCAGTGGATTCAGGAGACAAG
Seq A exon
GACTTACCTGCTAGATGG
Seq C2 exon
GTCCTGCATGGTGGAGGAGTCGGGAACACTGGAATCCCAGCTGGAAGCTACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_MULTIEX2-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.526
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Skipping Isoform:
ENSGALT00000039770fB12381
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGACAAGTTGCGCCAGGA
R:
ATTCCAGTGTTCCCGACTCCT
Band lengths:
104-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]