HsaEX0061550 @ hg19
Exon Skipping
Gene
ENSG00000197694 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) [Source:HGNC Symbol;Acc:11273]
Coordinates
chr9:131389665-131392654:+
Coord C1 exon
chr9:131389665-131389777
Coord A exon
chr9:131390204-131390221
Coord C2 exon
chr9:131392600-131392654
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTTGGATCTGCTCTCCACAGGAC
3' ss Score
8.79
5' ss Seq
TGGGTTAAT
5' ss Score
-3.68
Exon sequences
Seq C1 exon
GAGAGGGAGCTGGAGCTGCAGAAGGAACAGCGGCGGCAGGAGGAGAACGACAAGCTGCGCCAGGAGTTTGCCCAGCACGCCAACGCCTTCCACCAGTGGATCCAAGAGACCAG
Seq A exon
GACATACCTCCTCGATGG
Seq C2 exon
GTCCTGTATGGTGGAAGAGTCGGGGACCCTCGAATCCCAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197694-'62-66,'62-61,65-66
Average complexity
S
Mappability confidence:
100%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.000 C2=0.561
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=15.9),PF0043516=Spectrin=PU(24.5=59.1)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGAGAACGACAAGCTG
R:
TCCCCGACTCTTCCACCATAC
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)