MmuEX6100132 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29882539-29885194:+
Coord C1 exon
chr2:29882539-29882651
Coord A exon
chr2:29883151-29883168
Coord C2 exon
chr2:29885140-29885194
Length
18 bp
Sequences
Splice sites
3' ss Seq
GGACACTTGGATCTCCATAGAAC
3' ss Score
4.42
5' ss Seq
CGGGTTAAT
5' ss Score
-0.89
Exon sequences
Seq C1 exon
GAACGAGAACTGGAGCTGCAGAAGGAACAGCGGCGGCAGGAGGAGAATGACAAGCTGCGCCAAGAATTTGCCCAGCATGCCAACGCCTTCCACCAGTGGATCCAGGAAACAAG
Seq A exon
AACGTATCTCCTCGACGG
Seq C2 exon
GTCCTGCATGGTGGAAGAGTCGGGAACTCTGGAATCTCAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'62-67,'62-65,63-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.000 C2=0.509
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAGGAGAATGACAAGC
R:
AGTTCCCGACTCTTCCACCAT
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: