RnoEX0085737 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8594905-8597483:+
Coord C1 exon
chr3:8594905-8595017
Coord A exon
chr3:8595368-8595385
Coord C2 exon
chr3:8597429-8597483
Length
18 bp
Sequences
Splice sites
3' ss Seq
GGACACTTGGATCGCCATAGAAC
3' ss Score
2.21
5' ss Seq
CGGGTTAAT
5' ss Score
-0.89
Exon sequences
Seq C1 exon
GAGCGAGAACTGGAGCTGCAGAAGGAACAGCGGCGGCAGGAGGAGAATGACAAGCTACGCCAAGAGTTTGCCCAGCATGCCAACGCGTTCCACCAGTGGATCCAGGAAACAAG
Seq A exon
AACGTATCTCCTCGACGG
Seq C2 exon
GTCCTGCATGGTCGAAGAGTCGGGAACTCTGGAATCTCAGCTTGAAGCTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'87-99,'87-94,88-99
Average complexity
S
Mappability confidence:
100%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.546
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTACGCCAAGAGTTTGCC
R:
GCTGAGATTCCAGAGTTCCCG
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]