DreEX0074860 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13111481-13115594:+
Coord C1 exon
chr21:13111481-13111593
Coord A exon
chr21:13113207-13113224
Coord C2 exon
chr21:13115540-13115594
Length
18 bp
Sequences
Splice sites
3' ss Seq
GGGATCATTTCTCTAATCAGGAC
3' ss Score
6.97
5' ss Seq
TGGGTTAAT
5' ss Score
-3.68
Exon sequences
Seq C1 exon
GAGCGAGAACTGGAGCTGCAGAAGGAGCAGCGCCGACAGGAAGAGAATGATAAACTCAGACAGGAGTTTGCTCAGCATGCTAATGCTTTCCACCAATGGCTGCAGGAGACCAG
Seq A exon
GACATACCTTCTGGATGG
Seq C2 exon
GTCCTGCATGGTGGAAGAATCTGGAACTCTAGAGTCACAGCTAGAAGCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.000 C2=0.516
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(18.9=52.6)
A:
PF0043516=Spectrin=FE(20.7=100)
C2:
PF0043516=Spectrin=FE(17.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTTTGCTCAGCATGCT
R:
AGTGGCTTCTAGCTGTGACTCT
Band lengths:
105-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]